Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1202100 Malus domestica HOM05D006445 ORTHO05D008030 1.6e-208 729.6 466 100.0
MD16G1202300 Malus domestica HOM05D006445 ORTHO05D008030 2.8e-149 532.7 581 66.1
Prupe.1G023800 Prunus persica HOM05D006445 ORTHO05D008030 1.1e-121 441.0 581 55.4
CANSAT78G1649 Cannabis sativa HOM05D006445 ORTHO05D008030 3.4e-86 323.2 588 46.9
Cpa.g.sc44.136 Carica papaya HOM05D006445 ORTHO05D008030 2.5e-81 307.0 585 45.0
FAN22G0464 Fragaria x ananassa HOM05D006445 ORTHO05D008030 2.1e-80 303.9 590 48.5
FvH4_4g01790 Fragaria vesca HOM05D006445 ORTHO05D008030 1.0e-79 301.6 590 48.0
FAN17G0812 Fragaria x ananassa HOM05D006445 ORTHO05D008030 1.8e-79 300.8 590 48.0
RcHm_v2.0_Chr4g0388821 Rosa chinensis HOM05D006445 ORTHO05D008030 4.4e-78 296.2 588 45.4
Cfa008415 Carpinus fangiana HOM05D006445 ORTHO05D008030 3.7e-77 293.1 596 47.7
FAN12G4074 Fragaria x ananassa HOM05D006445 ORTHO05D008030 8.3e-77 292.0 590 47.8
Atru.chr4.2321 Acer truncatum HOM05D006445 ORTHO05D008030 1.6e-75 287.7 588 47.4
Dinv14061 Davidia involucrata HOM05D006445 ORTHO05D008030 1.5e-73 281.2 599 47.2
QL06p000554 Quercus lobata HOM05D006445 ORTHO05D008030 4.3e-73 279.6 596 43.6
Actinidia18525 Actinidia chinensis HOM05D006445 ORTHO05D008030 7.3e-73 278.9 580 46.9
Hma1.2p1_1095F.1_g256580 Hydrangea macrophylla HOM05D006445 ORTHO05D008030 1.2e-72 278.1 588 48.6
Actinidia08458 Actinidia chinensis HOM05D006445 ORTHO05D008030 2.1e-72 277.3 576 49.8
Thecc.04G241400 Theobroma cacao HOM05D006445 ORTHO05D008030 3.6e-72 276.6 540 46.3
arahy.Tifrunner.gnm1.ann1.G28WYQ Arachis hypogaea HOM05D006445 ORTHO05D008030 4.7e-72 276.2 592 46.5
TAR362G0995 Trochodendron aralioides HOM05D006445 ORTHO05D008030 1.4e-71 274.6 591 46.2
Manes.03G171500 Manihot esculenta HOM05D006445 ORTHO05D008030 2.0e-70 270.8 585 43.1
Potri.008G159500 Populus trichocarpa HOM05D006445 ORTHO05D008030 4.4e-70 269.6 588 45.9
Gohir.A09G220300 Gossypium hirsutum HOM05D006445 ORTHO05D008030 7.5e-70 268.9 534 46.6
Rhsim02G0031200 Rhododendron simsii HOM05D006445 ORTHO05D008030 1.7e-69 267.7 590 46.9
PGR004G1989 Punica granatum HOM05D006445 ORTHO05D008030 4.9e-69 266.2 569 41.7
Haze_11252 Corylus avellana HOM05D006445 ORTHO05D008030 1.4e-68 264.6 592 47.1
Duzib151G0014 Durio zibethinus HOM05D006445 ORTHO05D008030 1.4e-68 264.6 534 48.7
Sabra08G0121600 Salix brachista HOM05D006445 ORTHO05D008030 2.4e-68 263.8 548 49.3
CSS0014472 Camellia sinensis var. sinensis HOM05D006445 ORTHO05D008030 4.1e-68 263.1 590 45.4
Cc03_g04450 Coffea canephora HOM05D006445 ORTHO05D008030 1.6e-67 261.2 542 42.6
Duzib212G0108 Durio zibethinus HOM05D006445 ORTHO05D008030 1.6e-67 261.2 534 48.1
COL.COLO4_13180 Corchorus olitorius HOM05D006445 ORTHO05D008030 2.0e-67 260.8 548 48.0
TWI09G0629 Tripterygium wilfordii HOM05D006445 ORTHO05D008030 2.7e-67 260.4 582 41.1
Nn1g02503 Nelumbo nucifera HOM05D006445 ORTHO05D008030 1.3e-66 258.1 555 48.5
vmacro15391 Vaccinium macrocarpon HOM05D006445 ORTHO05D008030 3.9e-66 256.5 582 45.9
SGA_v2.0_scaffold101G29748 Striga asiatica HOM05D006445 ORTHO05D008030 1.5e-65 254.6 513 46.2
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 1.9e-65 254.2 565 38.9
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 1.9e-65 254.2 565 38.9
Gohir.D09G222500 Gossypium hirsutum HOM05D006445 ORTHO05D008030 3.3e-65 253.4 534 45.3
Gorai.006G243700 Gossypium raimondii HOM05D006445 ORTHO05D008030 3.3e-65 253.4 534 45.3
AUR62039163 Chenopodium quinoa HOM05D006445 ORTHO05D008030 7.3e-65 252.3 548 46.5
CiPaw.01G193800 Carya illinoinensis HOM05D006445 ORTHO05D008030 1.6e-64 251.1 553 42.9
Nitab4.5_0000321g0290 Nicotiana tabacum HOM05D006445 ORTHO05D008030 3.6e-64 250.0 541 44.2
MSTRG.4074 Avicennia marina HOM05D006445 ORTHO05D008030 4.7e-64 249.6 578 41.3
Migut.G00407 Erythranthe guttata HOM05D006445 ORTHO05D008030 4.7e-64 249.6 514 47.1
MELO3C014278.2 Cucumis melo HOM05D006445 ORTHO05D008030 1.4e-63 248.1 566 44.2
Migut.G00392 Erythranthe guttata HOM05D006445 ORTHO05D008030 2.3e-63 247.3 523 44.6
Thhalv10020381m.g Eutrema salsugineum HOM05D006445 ORTHO05D008030 2.3e-63 247.3 587 41.1
BcaC09g49223 Brassica carinata HOM05D006445 ORTHO05D008030 4.0e-63 246.5 589 41.4
Nitab4.5_0002446g0090 Nicotiana tabacum HOM05D006445 ORTHO05D008030 4.0e-63 246.5 539 43.2
Carub.0005s2255 Capsella rubella HOM05D006445 ORTHO05D008030 8.9e-63 245.4 586 40.1
Aa31LG8G9430 Aethionema arabicum HOM05D006445 ORTHO05D008030 1.2e-62 245.0 550 42.9
C01p41220 Brassica napus HOM05D006445 ORTHO05D008030 1.5e-62 244.6 589 41.3
BolC1t04076H Brassica oleracea HOM05D006445 ORTHO05D008030 1.5e-62 244.6 589 41.3
CsaV3_2G013340 Cucumis sativus L. HOM05D006445 ORTHO05D008030 2.6e-62 243.8 566 43.6
Lalb_Chr03g0037581 Lupinus albus HOM05D006445 ORTHO05D008030 3.4e-62 243.4 595 43.4
Manes.15G034000 Manihot esculenta HOM05D006445 ORTHO05D008030 5.8e-62 242.7 590 41.4
Nn3g19455 Nelumbo nucifera HOM05D006445 ORTHO05D008030 5.8e-62 242.7 587 45.0
AL5G37040 Arabidopsis lyrata HOM05D006445 ORTHO05D008030 9.8e-62 241.9 550 42.2
BcaB04g20485 Brassica carinata HOM05D006445 ORTHO05D008030 9.8e-62 241.9 581 40.6
BraA01t03345Z Brassica rapa HOM05D006445 ORTHO05D008030 1.7e-61 241.1 596 40.3
Sp3g20620 Schrenkiella parvula HOM05D006445 ORTHO05D008030 1.7e-61 241.1 538 41.8
Lj6A648T26 Lonicera japonica HOM05D006445 ORTHO05D008030 2.9e-61 240.4 586 44.9
A01p32190 Brassica napus HOM05D006445 ORTHO05D008030 8.3e-61 238.8 598 40.1
AT3G55760 Arabidopsis thaliana HOM05D006445 ORTHO05D008030 2.4e-60 237.3 550 41.6
Ca_23527_v3 Cicer arietinum L. HOM05D006445 ORTHO05D008030 4.1e-60 236.5 529 43.3
Aqoxy5G00384 Aquilegia oxysepala HOM05D006445 ORTHO05D008030 7.8e-59 232.3 551 39.9
Ciclev10004554m.g Citrus clementina HOM05D006445 ORTHO05D008030 6.6e-58 229.2 612 36.4
Sed0027736 Sechium edule HOM05D006445 ORTHO05D008030 1.9e-57 227.6 591 40.8
VMungo0720G0393 Vigna mungo HOM05D006445 ORTHO05D008030 3.6e-56 223.4 580 37.8
CAN.G231.21 Capsicum annuum HOM05D006445 ORTHO05D008030 8.1e-56 222.2 542 46.1
HanXRQChr12g0380371 Helianthus annuus HOM05D006445 ORTHO05D008030 8.1e-56 222.2 530 41.3
Lsat_1_v5_gn_5_65540 Lactuca sativa HOM05D006445 ORTHO05D008030 1.1e-55 221.9 526 40.9
Peaxi162Scf00131g00510 Petunia axillaris HOM05D006445 ORTHO05D008030 1.8e-55 221.1 532 38.2
Oeu064236.1 Olea europaea HOM05D006445 ORTHO05D008030 6.8e-55 219.2 533 41.8
Psat6g103160 Pisum sativum HOM05D006445 ORTHO05D008030 4.4e-54 216.5 595 40.2
ClCG06G006550 Citrullus lanatus HOM05D006445 ORTHO05D008030 5.8e-54 216.1 592 42.1
PSO541G5254 Papaver somniferum HOM05D006445 ORTHO05D008030 8.4e-53 212.2 539 43.2
CDE10G0086 Ceratophyllum demersum HOM05D006445 ORTHO05D008030 5.4e-52 209.5 518 40.3
Solyc06g053920.4 Solanum lycopersicum HOM05D006445 ORTHO05D008030 9.2e-52 208.8 544 40.4
DCAR_027254 Daucus carota HOM05D006445 ORTHO05D008030 3.5e-51 206.8 542 39.7
Sopen06g019080 Solanum pennellii HOM05D006445 ORTHO05D008030 3.5e-51 206.8 538 40.1
Lj6g0022017 Lotus japonicus HOM05D006445 ORTHO05D008030 3.0e-50 203.8 534 42.7
DCAR_002362 Daucus carota HOM05D006445 ORTHO05D008030 5.1e-50 203.0 534 44.0
SalBow2G0732 Salvia bowleyana HOM05D006445 ORTHO05D008030 8.6e-50 202.2 550 34.5
HPP92_007968 Vanilla planifolia HOM05D006445 ORTHO05D008030 2.5e-49 200.7 525 38.9
GSVIVG01018073001 Vitis vinifera HOM05D006445 ORTHO05D008030 7.3e-49 199.1 418 45.9
PGSC0003DMG400016314 Solanum tuberosum HOM05D006445 ORTHO05D008030 1.2e-48 198.4 538 39.8
DCAR_024183 Daucus carota HOM05D006445 ORTHO05D008030 3.6e-48 196.8 531 43.1
Eucgr.H03403 Eucalyptus grandis HOM05D006445 ORTHO05D008030 3.6e-48 196.8 460 47.8
Phvul.007G279100 Phaseolus vulgaris HOM05D006445 ORTHO05D008030 8.1e-48 195.7 583 36.0
TPR.G32777 Trifolium pratense HOM05D006445 ORTHO05D008030 2.0e-46 191.0 534 39.7
PSO675G2091 Papaver somniferum HOM05D006445 ORTHO05D008030 3.4e-46 190.3 557 38.8
ATR0665G293 Amborella trichopoda HOM05D006445 ORTHO05D008030 9.3e-44 182.2 469 45.2
Medtr1g041275 Medicago truncatula HOM05D006445 ORTHO05D008030 9.3e-44 182.2 531 37.7
EL10As20g24207 Beta vulgaris HOM05D006445 ORTHO05D008030 1.2e-43 181.8 520 43.7
Glyma.02G001900 Glycine max HOM05D006445 ORTHO05D008030 1.3e-42 178.3 600 36.2
arahy.Tifrunner.gnm1.ann1.IQUH92 Arachis hypogaea HOM05D006445 ORTHO05D008030 3.0e-42 177.2 457 46.8
unitig_749.g14084 Utricularia gibba HOM05D006445 ORTHO05D008030 3.3e-41 173.7 562 40.2
Lj6C649T7 Lonicera japonica HOM05D006445 ORTHO05D008030 2.1e-40 171.0 481 35.8
Hund20068 Selenicereus undatus HOM05D006445 ORTHO05D008030 5.8e-38 162.9 398 46.2
Sc15g0003230 Simmondsia chinensis HOM05D006445 ORTHO05D008030 7.1e-36 156.0 276 39.9
TAR549G0005 Trochodendron aralioides HOM05D006445 ORTHO05D008030 3.5e-35 153.7 186 73.7
BcaB07g33591 Brassica carinata HOM05D006445 ORTHO05D008030 4.3e-33 146.7 518 31.9
Sed0014630 Sechium edule HOM05D006445 ORTHO05D008030 5.6e-33 146.4 588 33.5
SMO351G0143 Selaginella moellendorffii HOM05D006445 ORTHO05D008030 1.3e-32 145.2 527 35.3
RcHm_v2.0_Chr4g0388691 Rosa chinensis HOM05D006445 ORTHO05D008030 1.2e-30 138.7 218 59.6
Mapoly0053s0066 Marchantia polymorpha HOM05D006445 ORTHO05D008030 2.5e-25 120.9 554 34.8
Os11g0586300 Oryza sativa ssp. japonica HOM05D006445 ORTHO05D008030 9.6e-25 119.0 388 39.9
SEGI_38745 Sequoiadendron giganteum HOM05D006445 ORTHO05D008030 3.7e-24 117.1 296 50.0
BcaB06g27077 Brassica carinata HOM05D006445 ORTHO05D008030 5.3e-23 113.2 210 41.0
Zm00001eb200610 Zea mays HOM05D006445 ORTHO05D008030 9.0e-23 112.5 180 57.2
CARHR165870 Cardamine hirsuta HOM05D006445 ORTHO05D008030 7.6e-22 109.4 329 42.2
RcHm_v2.0_Chr4g0388701 Rosa chinensis HOM05D006445 ORTHO05D008030 8.4e-21 105.9 162 51.2
SEGI_22971 Sequoiadendron giganteum HOM05D006445 ORTHO05D008030 8.7e-18 95.9 250 35.2
CDE10G0319 Ceratophyllum demersum HOM05D006445 ORTHO05D008030 8.2e-08 62.8 92 39.1
Pp3c25_530 Physcomitrium patens HOM05D006445 ORTHO05D008030 9.0e-07 59.3 496 35.7
Rhsim02G0030900 Rhododendron simsii HOM05D006445 ORTHO05D008030 9.0e-07 59.3 63 50.8


User provided reference genes

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