Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 5.0e-202 707.6 368 100.0
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 1.0e-178 630.2 368 89.1
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 9.5e-161 570.5 340 81.8
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.8e-143 513.1 344 75.0
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.8e-134 481.5 342 71.6
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.6e-134 481.1 342 71.3
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.1e-132 477.2 342 71.3
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.1e-132 477.2 342 71.3
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.1e-132 477.2 342 71.3
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.1e-132 477.2 342 71.3
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 3.3e-121 439.1 340 64.7
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 3.7e-120 435.6 341 64.8
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.1e-119 434.1 340 63.5
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 3.7e-112 409.1 340 60.3
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 1.4e-108 397.1 341 60.7
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 5.1e-106 388.7 340 58.2
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 4.4e-105 385.6 342 58.5
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 5.7e-105 385.2 340 58.2
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 6.3e-104 381.7 338 59.2
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.5e-102 375.6 346 59.0
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 7.7e-102 374.8 341 58.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 1.1e-100 370.9 341 58.7
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.2e-100 369.4 341 57.8
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 3.2e-100 369.4 346 55.2
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 4.2e-100 369.0 336 60.4
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.6e-99 367.1 344 57.0
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.4e-98 364.0 343 55.7
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 2.3e-98 363.2 341 57.2
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.0e-98 362.8 346 54.9
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 5.2e-98 362.1 341 53.7
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 2.6e-97 359.8 342 58.8
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.3e-96 357.5 346 54.6
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 4.8e-96 355.5 340 56.5
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 4.8e-96 355.5 342 56.7
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 8.2e-96 354.8 349 55.6
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.8e-95 353.6 338 56.2
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.8e-95 353.6 324 56.8
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 3.1e-95 352.8 342 55.3
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 7.0e-95 351.7 340 52.9
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 2.0e-94 350.1 343 55.4
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 4.5e-94 349.0 343 55.1
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.0e-93 347.8 340 55.9
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 1.3e-93 347.4 337 52.2
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.7e-93 347.1 340 52.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 2.9e-93 346.3 340 51.8
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.9e-92 343.6 338 53.0
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 4.2e-92 342.4 348 53.7
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 6.1e-91 338.6 344 54.4
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 1.4e-90 337.4 350 53.1
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 6.7e-90 335.1 343 53.6
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 8.8e-90 334.7 344 54.4
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 2.6e-89 333.2 343 53.1
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 6.3e-88 328.6 319 54.5
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.4e-87 327.4 347 51.6
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 3.5e-86 322.8 349 51.3
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 4.5e-86 322.4 341 51.9
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 1.0e-85 321.2 337 51.3
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.7e-85 320.5 340 52.6
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.1e-84 317.8 342 51.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 4.2e-84 315.8 341 54.3
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 2.1e-83 313.5 333 53.2
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 8.0e-83 311.6 345 49.9
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.5e-81 307.4 336 49.1
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 2.6e-81 306.6 346 50.0
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 3.4e-81 306.2 342 50.6
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 4.4e-81 305.8 325 52.6
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 3.8e-77 292.7 335 49.3
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 6.6e-77 292.0 343 48.7
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.1e-75 287.0 344 45.1
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 3.0e-74 283.1 330 48.2
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 2.6e-73 280.0 305 50.2
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 5.7e-73 278.9 351 46.4
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 1.3e-72 277.7 375 46.1
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 2.8e-72 276.6 330 47.0
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 4.9e-72 275.8 341 44.6
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 6.3e-72 275.4 320 45.9
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.5e-70 269.2 242 59.9
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 5.0e-69 265.8 319 46.1
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.6e-68 262.3 287 48.1
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 7.3e-68 261.9 352 44.3
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.1e-67 260.4 351 43.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 8.0e-67 258.5 333 45.0
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 8.0e-67 258.5 333 45.0
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 8.0e-67 258.5 333 45.0
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 3.1e-66 256.5 305 48.9
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 9.8e-65 251.5 326 44.2
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.3e-64 251.1 344 46.5
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-64 250.8 322 44.1
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.7e-64 250.8 324 46.0
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 2.2e-64 250.4 322 44.1
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 5.4e-63 245.7 336 42.6
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.2e-62 244.6 330 43.3
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 5.0e-61 239.2 325 46.2
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.5e-60 237.7 352 40.1
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 1.9e-55 220.7 240 50.8
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.4e-55 219.2 318 41.5
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 6.0e-54 215.7 337 39.8
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.0e-53 214.9 276 46.0
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 5.1e-53 212.6 330 38.5
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.2e-51 208.0 257 45.5
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.3e-50 203.8 349 37.8
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 3.9e-45 186.4 330 36.1
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 5.2e-42 176.0 333 35.1
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 8.9e-42 175.3 348 36.5
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 3.8e-40 169.9 244 42.2
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.1e-39 168.3 132 59.8
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.1e-39 168.3 323 34.1
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 1.6e-38 164.5 323 35.0
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.7e-37 161.0 139 57.6
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.4e-31 141.4 289 32.2
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 5.4e-31 139.4 188 45.7
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 9.3e-31 138.7 223 37.7
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 7.8e-30 135.6 215 38.1
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.9e-28 131.0 270 33.7
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 3.3e-28 130.2 148 43.2
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 5.8e-25 119.4 102 52.9
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 7.9e-22 109.0 88 53.4
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 7.6e-17 92.4 145 37.9
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 4.9e-16 89.7 110 40.9
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 4.9e-16 89.7 110 40.9
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-15 87.8 112 42.9
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.9e-15 87.8 112 42.9
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 4.2e-15 86.7 111 41.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 4.2e-15 86.7 111 42.3
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 4.2e-15 86.7 111 41.4
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 4.2e-15 86.7 112 44.6
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 5.5e-15 86.3 112 42.0
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 2.1e-14 84.3 97 43.3
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-13 82.0 61 62.3
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 5.6e-12 76.3 187 29.9
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 9.6e-12 75.5 88 48.9
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 4.8e-11 73.2 101 38.6
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 6.9e-10 69.3 66 50.0
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.0e-09 67.8 159 28.3
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 3.5e-06 57.0 109 36.7


User provided reference genes

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