Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 2.3e-88 328.9 176 100.0
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 9.1e-77 290.4 182 87.4
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 4.0e-64 248.4 182 76.9
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 4.9e-38 161.8 182 59.3
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 3.2e-37 159.1 177 58.2
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 2.1e-36 156.4 178 57.9
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 3.5e-36 155.6 183 57.4
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 2.3e-35 152.9 185 56.8
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 3.9e-35 152.1 179 57.0
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.1e-33 146.4 173 57.8
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 4.7e-33 145.2 173 57.8
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 4.7e-33 145.2 173 57.8
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 5.2e-32 141.7 182 48.9
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 4.4e-31 138.7 180 52.8
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 4.4e-31 138.7 185 52.4
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 9.9e-31 137.5 187 51.3
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 1.3e-30 137.1 178 52.8
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 2.9e-30 136.0 160 53.1
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 3.2e-29 132.5 153 54.2
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 5.4e-29 131.7 176 47.7
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 7.1e-29 131.3 175 50.3
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 7.1e-29 131.3 176 47.7
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 1.6e-28 130.2 109 69.7
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 1.6e-28 130.2 109 69.7
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 1.6e-28 130.2 174 52.3
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 2.1e-28 129.8 183 48.1
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 2.1e-28 129.8 131 58.0
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 2.7e-28 129.4 178 52.8
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 2.7e-28 129.4 182 49.5
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 3.5e-28 129.0 183 50.8
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 3.5e-28 129.0 165 50.3
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 4.6e-28 128.6 123 58.5
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 6.0e-28 128.3 123 62.6
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 6.0e-28 128.3 123 62.6
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 6.0e-28 128.3 129 58.9
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 6.0e-28 128.3 129 58.9
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 6.0e-28 128.3 129 58.9
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 7.8e-28 127.9 123 62.6
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 7.8e-28 127.9 123 62.6
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 1.0e-27 127.5 183 49.7
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 1.3e-27 127.1 172 51.2
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 2.3e-27 126.3 123 61.8
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 3.0e-27 125.9 182 52.2
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 3.9e-27 125.6 175 49.7
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 5.1e-27 125.2 180 47.8
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 5.1e-27 125.2 177 48.6
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 8.7e-27 124.4 180 48.9
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 1.1e-26 124.0 177 47.5
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 1.1e-26 124.0 164 48.2
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.1e-26 124.0 123 62.6
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 1.5e-26 123.6 98 68.4
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 1.5e-26 123.6 86 75.6
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 1.9e-26 123.2 183 47.0
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 3.3e-26 122.5 144 54.9
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 3.3e-26 122.5 184 47.8
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 5.6e-26 121.7 127 60.6
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 7.3e-26 121.3 188 47.9
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 7.3e-26 121.3 102 67.6
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 9.6e-26 120.9 116 60.3
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 9.6e-26 120.9 177 48.6
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 9.6e-26 120.9 145 53.8
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 1.2e-25 120.6 165 50.9
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 1.6e-25 120.2 177 48.0
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 2.1e-25 119.8 178 49.4
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 2.8e-25 119.4 177 48.0
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 2.8e-25 119.4 177 48.0
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 3.6e-25 119.0 174 45.4
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 3.6e-25 119.0 166 45.2
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 4.7e-25 118.6 98 64.3
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 6.2e-25 118.2 173 45.1
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 8.1e-25 117.9 176 48.3
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 1.1e-24 117.5 88 75.0
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 2.4e-24 116.3 121 54.5
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 4.0e-24 115.5 87 71.3
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 5.2e-24 115.2 158 46.8
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 6.9e-24 114.8 73 79.5
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 6.9e-24 114.8 71 81.7
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 2.0e-23 113.2 162 49.4
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 2.6e-23 112.8 168 44.0
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 2.6e-23 112.8 83 69.9
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 5.8e-23 111.7 173 46.2
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 7.6e-23 111.3 167 46.1
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 2.2e-22 109.8 130 51.5
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 2.9e-22 109.4 106 58.5
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 6.4e-22 108.2 67 79.1
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 8.4e-22 107.8 120 53.3
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 1.1e-21 107.5 171 46.8
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 1.9e-21 106.7 93 63.4
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.2e-20 104.0 170 45.9
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 2.1e-20 103.2 121 52.9
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 2.7e-20 102.8 76 71.1
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 6.0e-20 101.7 98 55.1
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 3.9e-19 99.0 162 43.8
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.9e-19 99.0 73 71.2
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 4.3e-18 95.5 160 45.0
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 7.3e-18 94.7 171 45.0
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 2.4e-16 89.7 159 42.1
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 5.3e-16 88.6 60 71.7
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 7.6e-15 84.7 65 67.7
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 4.2e-13 79.0 150 39.3
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 5.4e-13 78.6 116 44.0
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 6.7e-11 71.6 150 39.3
CDE07G0184 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 1.2e-07 60.8 115 34.8
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 1.7e-06 57.0 132 37.9
CBR_g18894 Chara braunii HOM05D007425 ORTHO05D009334 2.2e-06 56.6 116 32.8
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 2.2e-06 56.6 159 32.7


User provided reference genes

Program Settings