Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 1.9e-104 382.5 190 100.0
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 1.8e-86 322.8 175 92.6
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 3.3e-80 302.0 174 87.4
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 3.3e-72 275.4 178 78.1
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 3.3e-64 248.8 175 70.3
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 7.3e-64 247.7 174 69.5
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 3.8e-60 235.3 181 67.4
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 8.4e-60 234.2 167 71.9
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 8.4e-60 234.2 167 73.1
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 1.2e-58 230.3 162 69.1
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.7e-58 229.2 167 72.5
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 3.5e-58 228.8 182 68.1
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 1.3e-57 226.9 161 70.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 1.7e-57 226.5 175 66.9
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.7e-57 226.5 175 66.9
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.7e-57 226.5 185 62.2
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.0e-57 225.7 175 66.9
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 5.1e-57 224.9 175 68.0
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.3e-56 222.2 171 66.1
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 4.3e-56 221.9 183 65.0
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 5.6e-56 221.5 163 66.3
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 9.6e-56 220.7 160 68.8
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 2.1e-55 219.5 162 69.1
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 2.1e-55 219.5 164 70.1
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 6.2e-55 218.0 164 69.5
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 8.1e-55 217.6 164 67.7
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 8.1e-55 217.6 164 69.5
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 8.1e-55 217.6 167 65.3
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.1e-54 217.2 163 65.0
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 1.4e-54 216.9 163 68.1
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 1.8e-54 216.5 165 63.6
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 3.1e-54 215.7 170 65.3
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 9.0e-54 214.2 178 62.9
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 9.0e-54 214.2 161 68.3
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.2e-53 213.8 169 63.3
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 2.6e-53 212.6 178 61.2
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.3e-52 210.3 182 61.0
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.7e-52 209.9 167 62.3
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 2.2e-52 209.5 163 66.3
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 2.2e-52 209.5 166 63.9
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 4.9e-52 208.4 167 63.5
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.4e-51 206.8 178 59.6
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 2.4e-51 206.1 161 62.1
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 3.2e-51 205.7 161 62.7
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 4.2e-51 205.3 145 70.3
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 4.2e-51 205.3 168 65.5
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 4.2e-51 205.3 161 62.1
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 9.3e-51 204.1 161 63.4
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 9.3e-51 204.1 161 63.4
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 9.3e-51 204.1 161 63.4
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 9.3e-51 204.1 161 64.0
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.2e-50 203.8 170 58.8
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.2e-50 203.8 162 63.6
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 2.1e-50 203.0 161 62.7
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 7.9e-50 201.1 129 76.0
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 7.9e-50 201.1 161 61.5
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 1.0e-49 200.7 168 60.7
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 1.0e-49 200.7 163 62.6
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 3.0e-49 199.1 158 63.3
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 3.9e-49 198.7 167 64.1
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 5.1e-49 198.4 162 61.1
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 6.6e-49 198.0 182 57.1
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 8.7e-49 197.6 167 59.3
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 8.7e-49 197.6 160 58.8
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 1.1e-48 197.2 161 59.6
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.5e-48 196.8 178 59.0
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 3.3e-48 195.7 161 60.2
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.3e-48 195.7 163 60.1
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 4.3e-48 195.3 163 59.5
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 9.6e-48 194.1 174 60.3
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 1.3e-47 193.7 161 59.6
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 1.6e-47 193.4 168 58.9
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 4.8e-47 191.8 173 57.2
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 6.2e-47 191.4 179 57.0
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 6.2e-47 191.4 183 57.4
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.8e-46 189.9 168 60.7
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.8e-46 189.9 168 60.7
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 2.4e-46 189.5 173 57.8
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 2.4e-46 189.5 168 58.3
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 9.0e-46 187.6 168 58.9
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.0e-45 186.4 168 58.3
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 2.0e-45 186.4 168 58.3
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 2.6e-45 186.0 90 97.8
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 4.5e-45 185.3 181 53.6
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 7.1e-43 177.9 125 65.6
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 3.7e-39 165.6 162 58.6
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.5e-37 160.2 100 78.0
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 3.4e-37 159.1 101 77.2
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 1.3e-36 157.1 101 73.3
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 6.5e-36 154.8 124 66.1
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 5.5e-35 151.8 100 71.0
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 7.1e-35 151.4 135 55.6
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 1.2e-34 150.6 126 57.9
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 2.7e-34 149.4 133 56.4
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 6.0e-34 148.3 100 72.0
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 6.0e-34 148.3 158 49.4
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 3.9e-33 145.6 94 73.4
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 8.7e-33 144.4 105 66.7
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 1.1e-32 144.1 131 51.9
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.5e-32 142.9 125 56.8
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 2.1e-31 139.8 121 57.0
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 8.2e-31 137.9 103 64.1
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 2.4e-30 136.3 104 66.3
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 9.0e-30 134.4 97 66.0
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 2.6e-29 132.9 90 70.0
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 2.6e-29 132.9 122 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.4e-27 127.1 126 52.4
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 6.1e-26 121.7 100 61.0
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 1.8e-25 120.2 105 60.0
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 9.7e-24 114.4 121 53.7
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.1e-22 110.9 142 43.7
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 5.3e-22 108.6 85 65.9
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.9e-19 100.1 84 58.3
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 3.6e-18 95.9 159 35.8
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.1e-16 90.9 57 70.2
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 7.4e-16 88.2 68 61.8
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 1.7e-15 87.0 98 50.0
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-15 86.3 96 49.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 6.9e-14 81.6 65 64.6
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.7e-07 59.3 40 62.5
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 8.2e-07 58.2 33 78.8


User provided reference genes

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