Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 2.5e-161 572.0 283 100.0
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.2e-128 462.6 283 81.3
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 6.1e-107 391.3 283 68.9
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.3e-104 383.6 279 68.8
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 4.8e-104 381.7 283 68.9
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 6.3e-96 354.8 262 67.9
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 2.8e-91 339.3 286 62.6
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.2e-86 323.9 284 59.9
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 3.6e-83 312.4 274 59.9
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 1.5e-81 307.0 274 56.9
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.1e-79 300.8 274 58.4
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 4.1e-79 298.9 247 59.9
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 3.0e-77 292.7 275 56.0
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 1.9e-76 290.0 282 54.6
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 5.6e-76 288.5 282 52.8
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 7.3e-76 288.1 279 57.3
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 3.6e-75 285.8 281 53.7
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 1.8e-74 283.5 279 55.6
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 5.2e-74 282.0 271 55.0
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 8.9e-74 281.2 285 53.0
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 2.0e-73 280.0 259 56.4
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 2.6e-73 279.6 288 52.4
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 3.4e-73 279.3 292 52.4
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 4.4e-73 278.9 280 51.8
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 2.9e-72 276.2 290 51.7
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 2.9e-72 276.2 288 51.7
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 2.9e-72 276.2 296 53.0
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 4.9e-72 275.4 278 52.9
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 8.3e-72 274.6 281 52.0
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 9.2e-71 271.2 281 49.1
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 4.6e-70 268.9 286 53.5
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 7.8e-70 268.1 265 50.9
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 1.0e-69 267.7 262 54.6
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 1.3e-69 267.3 279 52.3
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 1.7e-69 266.9 287 51.2
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 2.3e-69 266.5 278 52.5
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 6.6e-69 265.0 265 54.3
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 6.6e-69 265.0 276 52.5
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 2.5e-68 263.1 281 49.5
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 4.3e-68 262.3 274 53.3
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 9.5e-68 261.2 273 50.9
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 3.6e-67 259.2 293 48.5
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 8.1e-67 258.1 274 51.5
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 1.4e-66 257.3 269 53.2
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 4.0e-66 255.8 277 51.3
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 5.2e-66 255.4 275 51.3
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 2.6e-65 253.1 273 50.5
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 4.4e-65 252.3 189 68.3
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 2.9e-64 249.6 248 57.3
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 1.9e-63 246.9 298 46.3
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 4.1e-63 245.7 265 51.3
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 1.6e-62 243.8 274 49.6
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 2.1e-62 243.4 298 48.0
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 6.0e-62 241.9 279 47.3
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 3.3e-60 236.1 271 47.2
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 4.3e-60 235.7 262 49.6
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 1.2e-59 234.2 309 46.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.8e-58 230.3 273 46.9
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 3.1e-58 229.6 267 49.4
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 5.8e-57 225.3 290 45.9
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 3.8e-56 222.6 214 54.7
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 4.6e-54 215.7 253 48.2
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.9e-52 210.3 256 48.0
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 1.9e-52 210.3 271 44.6
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 5.6e-52 208.8 223 48.0
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 1.2e-51 207.6 293 42.7
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 5.2e-50 202.2 247 47.0
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 1.9e-47 193.7 213 50.2
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 9.3e-47 191.4 249 43.4
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 2.6e-41 173.3 214 46.3
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 4.6e-38 162.5 239 41.0
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 3.0e-37 159.8 208 43.3
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 1.6e-35 154.1 183 47.5
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 2.1e-35 153.7 304 32.6
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 9.9e-33 144.8 85 83.5
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 2.2e-32 143.7 344 30.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 5.5e-31 139.0 128 59.4
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 1.0e-29 134.8 118 59.3
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 5.3e-26 122.5 92 60.9
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 1.1e-20 104.8 127 43.3
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.9e-20 104.0 99 56.6
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 2.5e-20 103.6 99 56.6
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 6.3e-19 99.0 85 51.8
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 6.3e-19 99.0 80 58.8
SEGI_08073 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 9.7e-12 75.1 142 33.8
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 2.2e-11 73.9 273 25.6
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 6.3e-11 72.4 73 49.3
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 5.3e-10 69.3 273 26.0
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.5e-09 67.8 273 25.6
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.5e-09 67.8 273 25.6
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 2.0e-09 67.4 273 25.6
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.0e-09 67.4 273 25.6
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.6e-09 67.0 273 25.6
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 5.9e-09 65.9 265 28.7
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 7.7e-09 65.5 266 24.1
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 7.7e-09 65.5 90 40.0
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 1.0e-08 65.1 273 26.4
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.0e-08 65.1 93 36.6
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 1.0e-08 65.1 262 26.7
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.0e-08 65.1 90 36.7
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 1.3e-08 64.7 114 36.0
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.7e-08 64.3 95 37.9
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 1.7e-08 64.3 261 25.7
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 5.0e-08 62.8 254 26.8
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 6.5e-08 62.4 92 35.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 8.5e-08 62.0 271 24.4
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 8.5e-08 62.0 271 24.4
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.1e-07 61.6 93 38.7
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 1.1e-07 61.6 93 38.7
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.1e-07 61.6 269 26.4
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 1.1e-07 61.6 90 41.1
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 1.1e-07 61.6 263 25.9
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.1e-07 61.6 93 36.6
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.4e-07 61.2 266 25.2
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 1.4e-07 61.2 97 35.1
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.9e-07 60.8 95 32.6
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 1.9e-07 60.8 91 39.6
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 1.9e-07 60.8 273 25.3
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 2.5e-07 60.5 98 31.6
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 2.5e-07 60.5 261 26.1
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 2.5e-07 60.5 92 35.9
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 2.5e-07 60.5 92 35.9
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 3.2e-07 60.1 91 37.4
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 3.2e-07 60.1 262 25.2
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 3.2e-07 60.1 93 33.3
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 7.2e-07 58.9 262 25.6
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 7.2e-07 58.9 92 32.6
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 9.4e-07 58.5 91 34.1
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 9.4e-07 58.5 91 35.2
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 9.4e-07 58.5 88 39.8
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 9.4e-07 58.5 91 34.1
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.2e-06 58.2 107 37.4
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.2e-06 58.2 262 24.4
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.2e-06 58.2 260 24.6
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.6e-06 57.8 91 34.1
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 1.6e-06 57.8 261 25.3
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.6e-06 57.8 91 36.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.6e-06 57.8 90 33.3
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 2.7e-06 57.0 94 35.1
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 3.6e-06 56.6 94 30.9
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 3.6e-06 56.6 90 36.7
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 4.7e-06 56.2 99 30.3
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 6.1e-06 55.8 264 22.3
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 7.9e-06 55.5 263 23.2


User provided reference genes

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