Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1764.6 872 100.0
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1735.3 872 98.2
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1658.3 872 93.1
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1579.3 868 88.8
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1543.5 857 87.9
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1542.7 857 88.0
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1537.7 857 87.7
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1436.0 879 81.5
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1421.4 885 80.5
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1418.7 944 76.2
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1416.0 891 79.7
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1409.4 880 79.1
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1377.8 878 78.5
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1376.3 878 78.6
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1365.5 918 75.1
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1364.7 879 78.2
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1363.6 885 77.6
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1357.0 888 77.1
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1354.7 882 77.6
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1352.4 879 78.0
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1342.4 880 76.7
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1333.9 878 75.9
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1333.5 853 79.2
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1327.4 875 76.9
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1327.0 878 75.9
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1314.7 881 75.8
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1292.3 881 75.0
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1290.0 929 71.4
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1285.8 903 72.6
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1282.3 855 75.7
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1280.4 898 72.6
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1280.4 898 72.6
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1268.1 866 73.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1262.3 877 72.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1258.0 886 73.7
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1256.1 889 71.2
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1242.6 865 73.5
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1242.3 866 72.9
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1238.0 877 71.9
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1237.2 854 73.1
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1236.5 872 71.6
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1235.7 1007 65.1
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1234.6 876 71.8
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1231.5 881 70.4
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1226.8 898 70.2
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1221.5 855 73.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1219.1 878 71.0
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1218.8 855 73.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1212.2 855 73.2
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 794 76.4
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1205.7 861 70.4
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1203.0 880 70.3
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1200.3 897 69.0
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1199.9 900 68.6
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1199.5 874 70.6
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1194.1 868 70.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1193.3 878 69.8
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1179.5 837 72.6
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1177.5 846 71.2
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1172.9 953 65.4
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1166.4 811 73.5
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1164.4 864 69.0
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1152.1 872 68.0
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1138.3 874 66.8
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1122.5 884 65.5
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1118.2 866 67.8
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1111.7 886 65.9
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1111.3 883 66.5
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1110.5 854 66.7
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1105.1 850 67.2
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1083.9 870 65.1
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 0.0e+00 1080.5 853 65.9
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 8.5e-309 1063.5 840 65.7
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.5e-308 1062.0 878 64.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 4.8e-304 1047.7 877 64.4
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.5e-300 1036.2 874 62.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.8e-298 1029.2 854 63.3
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 2.6e-297 1025.4 854 62.4
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 4.8e-296 1021.1 856 62.4
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 1.6e-294 1016.1 848 63.3
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 7.7e-294 1013.8 867 62.4
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 6.8e-290 1000.7 865 61.4
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 6.8e-290 1000.7 852 62.8
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 4.4e-289 998.0 857 61.8
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 4.4e-289 998.0 857 61.8
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 7.5e-289 997.3 854 62.1
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.8e-288 995.3 857 62.0
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.8e-287 992.6 857 61.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 2.9e-280 968.8 857 60.9
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 8.6e-277 957.2 780 64.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.0e-274 950.3 849 59.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 9.5e-268 927.2 844 59.1
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.1e-266 923.7 852 59.5
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 7.6e-241 837.8 791 58.0
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.8e-237 826.6 882 53.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 5.6e-236 821.6 796 58.3
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 5.5e-231 805.1 735 60.3
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.3e-213 747.3 527 72.1
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.5e-204 717.2 932 45.9
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.4e-199 700.7 619 60.3
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.6e-198 696.0 915 46.3
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 7.2e-191 671.8 399 82.5
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 4.1e-178 629.4 369 82.9
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.2e-172 611.3 854 43.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.3e-168 597.8 436 70.4
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 2.9e-168 596.7 475 67.4
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.0e-165 588.2 413 72.2
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.3e-163 578.6 390 75.9
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 9.9e-132 475.3 508 53.5
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.6e-121 439.9 275 77.1
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.7e-99 368.2 550 43.3
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.7e-99 368.2 550 43.3
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 6.9e-93 346.3 362 52.5
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.1e-85 320.5 175 87.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.2e-84 318.9 284 57.0
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.3e-80 304.7 279 62.7
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.7e-79 299.3 366 48.1
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.9e-75 287.7 151 90.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.9e-74 285.0 862 29.4
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.0e-67 262.7 145 90.3
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.6e-63 248.1 137 86.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.4e-56 225.7 188 62.2
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.7e-52 211.5 117 79.5
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.3e-46 192.6 255 42.7
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.5e-42 179.1 253 38.3
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 6.4e-38 163.7 187 52.4
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 4.1e-29 134.4 355 30.7
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.7e-27 129.0 87 77.0
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 4.0e-24 117.9 129 48.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 6.4e-22 110.5 156 39.7
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.8e-16 92.4 233 27.5
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.2e-15 89.7 81 59.3
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 9.9e-15 86.7 55 67.3
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 9.9e-15 86.7 129 39.5
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.2e-14 85.5 55 74.5
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 74.5
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 9.3e-13 80.1 69 58.0
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 4.6e-12 77.8 65 60.0
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.3e-11 75.5 118 39.0
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 3.3e-10 71.6 33 90.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 4.5e-07 61.2 51 56.9
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 1.3e-06 59.7 62 51.6
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 2.9e-06 58.5 86 38.4


User provided reference genes

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