Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 0.0e+00 1348.2 690 100.0
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 0.0e+00 1187.2 688 87.9
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.1e-303 1046.2 696 79.6
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 6.0e-273 944.1 695 72.8
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.2e-259 899.0 695 69.9
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 2.4e-258 895.6 695 68.9
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.1e-258 894.0 695 69.1
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.0e-256 890.2 681 70.5
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.2e-253 877.9 695 68.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 4.7e-246 854.7 695 66.6
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.1e-238 829.3 716 62.3
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.9e-231 806.2 697 62.0
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.2e-226 788.5 694 62.8
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 5.5e-226 788.1 699 61.8
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 5.8e-220 768.1 864 51.9
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 9.0e-213 744.2 694 59.8
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 2.0e-212 743.0 674 60.4
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 5.0e-211 738.4 691 60.6
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 6.7e-208 728.0 698 60.3
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.1e-207 727.2 671 60.1
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.1e-205 719.2 678 61.1
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 7.2e-202 708.0 678 60.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.1e-200 701.8 690 57.1
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.5e-199 700.3 677 58.3
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 2.0e-199 699.9 676 58.4
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 1.3e-198 697.2 696 56.9
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 9.1e-197 691.0 700 55.6
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 5.5e-194 681.8 696 54.7
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 2.1e-193 679.9 682 58.4
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.3e-192 676.4 702 55.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.5e-191 673.7 694 54.0
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 3.3e-191 672.5 695 54.7
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 2.2e-187 659.8 717 54.7
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 3.8e-187 659.1 696 55.5
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.5e-187 658.3 683 55.5
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 2.5e-186 656.4 683 55.3
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 1.6e-185 653.7 699 55.2
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 2.1e-185 653.3 692 54.2
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.7e-185 652.9 648 55.9
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 2.6e-183 646.4 692 53.9
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 9.7e-183 644.4 703 55.0
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 4.8e-182 642.1 703 55.3
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.1e-181 641.0 700 53.3
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 3.5e-180 636.0 694 53.5
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 8.5e-179 631.3 695 53.1
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 9.4e-178 627.9 685 54.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 3.6e-177 625.9 737 51.7
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.4e-176 624.0 638 56.3
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.5e-175 620.5 700 53.1
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.3e-171 607.4 721 50.1
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 1.3e-171 607.4 698 52.1
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.7e-171 607.1 714 51.0
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 2.3e-171 606.7 694 52.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 3.8e-171 605.9 631 55.6
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.6e-169 600.5 682 51.8
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 6.1e-169 598.6 690 52.0
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 8.0e-169 598.2 671 52.9
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 3.0e-168 596.3 685 51.2
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 5.2e-168 595.5 751 50.9
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.5e-167 594.0 692 51.7
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 8.3e-166 588.2 688 52.8
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.1e-165 587.8 688 51.7
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.1e-165 587.8 719 50.2
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 3.2e-165 586.3 679 52.3
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 5.9e-164 582.0 647 53.6
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 7.8e-164 581.6 681 51.0
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 8.6e-163 578.2 673 51.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.1e-162 577.8 669 51.7
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.1e-161 573.5 703 49.9
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.6e-161 572.8 647 53.3
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 4.7e-161 572.4 668 51.2
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 4.7e-161 572.4 664 51.8
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.4e-160 570.9 675 51.1
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 2.3e-160 570.1 593 55.5
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 6.8e-160 568.5 668 50.6
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 3.4e-159 566.2 667 52.0
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 5.8e-159 565.5 667 51.9
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 9.8e-159 564.7 666 51.8
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 2.2e-158 563.5 743 48.3
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.7e-158 562.8 666 51.4
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 4.9e-158 562.4 678 50.4
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.4e-157 560.8 686 50.1
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 2.4e-157 560.1 667 51.9
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.6e-156 557.4 605 54.9
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 2.0e-156 557.0 667 51.6
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.7e-156 556.6 699 48.8
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 4.6e-156 555.8 589 53.3
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.7e-155 553.9 672 49.0
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 5.6e-154 548.9 682 50.3
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.8e-152 543.9 676 50.3
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 7.5e-151 538.5 672 51.2
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 7.5e-151 538.5 677 48.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 9.8e-151 538.1 674 51.6
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-150 537.3 672 51.0
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.7e-150 537.3 630 49.8
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.7e-150 537.3 701 48.1
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 8.3e-150 535.0 672 50.6
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 2.1e-148 530.4 654 52.3
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 1.3e-147 527.7 689 47.2
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.5e-146 523.5 699 47.2
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.8e-144 517.3 683 48.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 2.3e-144 516.9 690 47.5
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.2e-143 514.6 678 47.6
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.3e-142 511.1 720 45.7
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 8.3e-142 508.4 675 46.4
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 7.8e-140 501.9 669 46.8
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 4.0e-136 489.6 619 48.5
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 3.5e-132 476.5 684 45.2
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 6.2e-129 465.7 677 45.8
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 8.4e-126 455.3 699 43.6
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.1e-122 444.9 645 44.3
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 9.6e-122 441.8 783 40.4
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.1e-121 440.7 644 45.8
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 3.8e-110 403.3 677 41.9
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.2e-109 400.2 680 40.4
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.8e-103 379.4 485 48.0
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.5e-100 370.2 422 51.9
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 8.2e-97 359.0 610 40.0
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.4e-93 348.2 728 35.6
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 7.7e-87 325.9 612 37.4
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 5.5e-77 293.1 672 34.4
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 8.8e-75 285.8 713 33.2
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 3.8e-62 243.8 688 30.8
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 3.2e-61 240.7 657 31.7
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.7e-54 218.4 319 43.3
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 8.3e-49 199.5 231 50.6
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 7.0e-48 196.4 163 63.8
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 7.8e-47 193.0 238 49.2
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 3.9e-46 190.7 170 61.2
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 8.9e-35 152.9 486 29.2
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.9e-32 145.2 764 27.7
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.2e-31 142.5 137 59.9
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 6.2e-28 130.2 100 66.0
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 2.2e-25 121.7 138 52.9
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 4.9e-25 120.6 674 25.2
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 6.4e-25 120.2 105 56.2
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.5e-13 81.6 102 49.0
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.8e-12 78.2 174 29.9
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 9.9e-10 69.7 62 53.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.4e-08 65.9 88 52.3
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 1.6e-07 62.4 133 35.3
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 1.6e-07 62.4 133 35.3
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 1.6e-07 62.4 133 35.3
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 1.0e-06 59.7 131 35.1
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 3.0e-06 58.2 63 46.0


User provided reference genes

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