Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1150100 Malus domestica HOM05D004749 ORTHO05D005995 4.9e-94 347.8 179 100.0
MD16G1150500 Malus domestica HOM05D004749 ORTHO05D005995 1.2e-60 236.9 290 52.8
MD12G1007400 Malus domestica HOM05D004749 ORTHO05D005995 5.7e-58 228.0 290 50.3
Prupe.1G114400 Prunus persica HOM05D004749 ORTHO05D005995 6.2e-57 224.6 290 49.3
MD14G1004700 Malus domestica HOM05D004749 ORTHO05D005995 9.0e-56 220.7 265 52.5
TAR362G1144 Trochodendron aralioides HOM05D004749 ORTHO05D005995 2.0e-55 219.5 290 49.3
Actinidia13350 Actinidia chinensis HOM05D004749 ORTHO05D005995 6.5e-54 214.5 295 47.8
Hma1.2p1_1168F.1_g263150 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 8.4e-54 214.2 290 47.9
Hma1.2p1_4126F.1_g338340 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 8.4e-54 214.2 290 47.9
RcHm_v2.0_Chr4g0411531 Rosa chinensis HOM05D004749 ORTHO05D005995 4.2e-53 211.8 289 47.4
MELO3C008635.2 Cucumis melo HOM05D004749 ORTHO05D005995 1.2e-52 210.3 289 47.4
CsaV3_2G009980 Cucumis sativus L. HOM05D004749 ORTHO05D005995 1.2e-52 210.3 289 47.4
QL04p048178 Quercus lobata HOM05D004749 ORTHO05D005995 1.6e-52 209.9 290 47.6
ClCG11G010380 Citrullus lanatus HOM05D004749 ORTHO05D005995 2.7e-52 209.1 289 47.1
Thecc.04G246100 Theobroma cacao HOM05D004749 ORTHO05D005995 3.5e-52 208.8 290 46.9
QL06p012791 Quercus lobata HOM05D004749 ORTHO05D005995 4.6e-52 208.4 290 47.2
TWI73G0343 Tripterygium wilfordii HOM05D004749 ORTHO05D005995 6.1e-52 208.0 290 46.2
Duzib052G0525 Durio zibethinus HOM05D004749 ORTHO05D005995 7.9e-52 207.6 290 46.6
Potri.008G103000 Populus trichocarpa HOM05D004749 ORTHO05D005995 7.9e-52 207.6 292 46.2
CANSAT11G0071 Cannabis sativa HOM05D004749 ORTHO05D005995 1.0e-51 207.2 290 47.2
CiPaw.01G136300 Carya illinoinensis HOM05D004749 ORTHO05D005995 1.0e-51 207.2 290 46.6
Sed0018873 Sechium edule HOM05D004749 ORTHO05D005995 1.0e-51 207.2 289 47.1
CiPaw.02G073100 Carya illinoinensis HOM05D004749 ORTHO05D005995 1.8e-51 206.5 290 46.6
Sabra08G0077900 Salix brachista HOM05D004749 ORTHO05D005995 1.8e-51 206.5 290 46.6
FAN22G0862 Fragaria x ananassa HOM05D004749 ORTHO05D005995 2.3e-51 206.1 295 45.4
Gohir.D09G225200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 3.0e-51 205.7 290 46.2
Gorai.006G246700 Gossypium raimondii HOM05D004749 ORTHO05D005995 3.0e-51 205.7 290 46.2
arahy.Tifrunner.gnm1.ann1.CI16ME Arachis hypogaea HOM05D004749 ORTHO05D005995 3.9e-51 205.3 290 46.2
arahy.Tifrunner.gnm1.ann1.YK8CX2 Arachis hypogaea HOM05D004749 ORTHO05D005995 3.9e-51 205.3 290 46.2
PGSC0003DMG400012333 Solanum tuberosum HOM05D004749 ORTHO05D005995 3.9e-51 205.3 289 46.7
TAR633G2406 Trochodendron aralioides HOM05D004749 ORTHO05D005995 5.1e-51 204.9 295 46.1
Cpa.g.sc106.97 Carica papaya HOM05D004749 ORTHO05D005995 6.7e-51 204.5 288 47.6
Gohir.A09G223200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 6.7e-51 204.5 290 45.9
Nitab4.5_0006920g0020 Nicotiana tabacum HOM05D004749 ORTHO05D005995 6.7e-51 204.5 289 46.0
Solyc08g081330.4 Solanum lycopersicum HOM05D004749 ORTHO05D005995 6.7e-51 204.5 289 46.7
Sopen08g029650 Solanum pennellii HOM05D004749 ORTHO05D005995 6.7e-51 204.5 289 46.7
FvH4_4g12660 Fragaria vesca HOM05D004749 ORTHO05D005995 1.1e-50 203.8 295 45.4
FAN07G1280 Fragaria x ananassa HOM05D004749 ORTHO05D005995 1.1e-50 203.8 295 45.4
FAN12G1239 Fragaria x ananassa HOM05D004749 ORTHO05D005995 1.1e-50 203.8 295 45.4
Nitab4.5_0001220g0090 Nicotiana tabacum HOM05D004749 ORTHO05D005995 1.1e-50 203.8 289 46.0
Duzib151G0494 Durio zibethinus HOM05D004749 ORTHO05D005995 1.5e-50 203.4 290 45.5
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 1.9e-50 203.0 290 45.5
Potri.010G148000 Populus trichocarpa HOM05D004749 ORTHO05D005995 1.9e-50 203.0 290 45.9
MBI19_g03265_MAGBIO Magnolia biondii HOM05D004749 ORTHO05D005995 3.3e-50 202.2 290 46.2
CSS0022958 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 9.7e-50 200.7 295 45.4
Lalb_Chr07g0181981 Lupinus albus HOM05D004749 ORTHO05D005995 9.7e-50 200.7 295 44.1
Atru.chr4.3050 Acer truncatum HOM05D004749 ORTHO05D005995 1.3e-49 200.3 290 44.8
Migut.A01124 Erythranthe guttata HOM05D004749 ORTHO05D005995 1.3e-49 200.3 290 45.9
Ciclev10005025m.g Citrus clementina HOM05D004749 ORTHO05D005995 2.8e-49 199.1 290 44.8
Medtr1g100240 Medicago truncatula HOM05D004749 ORTHO05D005995 2.8e-49 199.1 290 45.2
Cfa014134 Carpinus fangiana HOM05D004749 ORTHO05D005995 4.8e-49 198.4 290 44.5
Cc02_g31810 Coffea canephora HOM05D004749 ORTHO05D005995 4.8e-49 198.4 289 45.0
CAN.G532.7 Capsicum annuum HOM05D004749 ORTHO05D005995 6.3e-49 198.0 289 45.3
GSVIVG01034965001 Vitis vinifera HOM05D004749 ORTHO05D005995 1.1e-48 197.2 295 44.7
VMungo0720G2504 Vigna mungo HOM05D004749 ORTHO05D005995 1.8e-48 196.4 290 44.5
Nn3g21759 Nelumbo nucifera HOM05D004749 ORTHO05D005995 5.3e-48 194.9 290 44.5
Psat6g193640 Pisum sativum HOM05D004749 ORTHO05D005995 5.3e-48 194.9 294 43.5
Manes.09G084300 Manihot esculenta HOM05D004749 ORTHO05D005995 6.9e-48 194.5 290 45.2
PSO210G5482 Papaver somniferum HOM05D004749 ORTHO05D005995 6.9e-48 194.5 290 45.2
PSO210G7457 Papaver somniferum HOM05D004749 ORTHO05D005995 6.9e-48 194.5 290 45.2
Aqoxy1G00958 Aquilegia oxysepala HOM05D004749 ORTHO05D005995 9.0e-48 194.1 290 45.2
Sabra10G0114100 Salix brachista HOM05D004749 ORTHO05D005995 9.0e-48 194.1 290 43.4
Lj4g0011402 Lotus japonicus HOM05D004749 ORTHO05D005995 2.0e-47 193.0 290 44.5
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 5.9e-47 191.4 285 45.6
FAN17G3131 Fragaria x ananassa HOM05D004749 ORTHO05D005995 2.9e-46 189.1 333 40.2
Oeu061088.1 Olea europaea HOM05D004749 ORTHO05D005995 2.9e-46 189.1 289 43.6
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 3.8e-46 188.7 291 42.3
Carub.0007s1960 Capsella rubella HOM05D004749 ORTHO05D005995 5.0e-46 188.3 290 42.4
Haze_01330 Corylus avellana HOM05D004749 ORTHO05D005995 6.5e-46 188.0 295 43.7
Nn4g25537 Nelumbo nucifera HOM05D004749 ORTHO05D005995 2.5e-45 186.0 295 42.7
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 3.2e-45 185.7 290 43.8
Glyma.17G035700 Glycine max HOM05D004749 ORTHO05D005995 9.4e-45 184.1 290 43.4
Sp7g19970 Schrenkiella parvula HOM05D004749 ORTHO05D005995 9.4e-45 184.1 290 42.1
Hma1.2p1_1400F.1_g280890 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 2.7e-44 182.6 248 50.4
Zm00001eb395880 Zea mays HOM05D004749 ORTHO05D005995 2.7e-44 182.6 290 42.1
COL.COLO4_15791 Corchorus olitorius HOM05D004749 ORTHO05D005995 4.6e-44 181.8 285 43.5
HanXRQChr17g0569351 Helianthus annuus HOM05D004749 ORTHO05D005995 7.9e-44 181.0 293 41.6
PGR031G3778 Punica granatum HOM05D004749 ORTHO05D005995 1.4e-43 180.3 292 42.8
THA.LOC104827101 Tarenaya hassleriana HOM05D004749 ORTHO05D005995 1.4e-43 180.3 292 42.1
MSTRG.12116 Avicennia marina HOM05D004749 ORTHO05D005995 2.3e-43 179.5 289 42.6
Glyma.07G237800 Glycine max HOM05D004749 ORTHO05D005995 2.3e-43 179.5 290 42.8
Hund18596 Selenicereus undatus HOM05D004749 ORTHO05D005995 6.7e-43 177.9 288 43.4
EL10Ac7g16373 Beta vulgaris HOM05D004749 ORTHO05D005995 1.5e-42 176.8 295 41.0
Phvul.003G116600 Phaseolus vulgaris HOM05D004749 ORTHO05D005995 1.5e-42 176.8 290 42.8
CDE02G1224 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 2.0e-42 176.4 290 41.7
SalBow1G5780 Salvia bowleyana HOM05D004749 ORTHO05D005995 2.0e-42 176.4 290 41.7
SEGI_28650 Sequoiadendron giganteum HOM05D004749 ORTHO05D005995 2.5e-42 176.0 285 41.1
Lsat_1_v5_gn_9_58140 Lactuca sativa HOM05D004749 ORTHO05D005995 4.3e-42 175.3 288 40.6
ECA246G2874 Erigeron canadensis HOM05D004749 ORTHO05D005995 1.7e-41 173.3 289 41.5
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 2.8e-41 172.6 295 41.7
Actinidia14251 Actinidia chinensis HOM05D004749 ORTHO05D005995 4.1e-40 168.7 266 43.6
Haze_22859 Corylus avellana HOM05D004749 ORTHO05D005995 5.3e-40 168.3 290 40.3
Rhsim10G0104300 Rhododendron simsii HOM05D004749 ORTHO05D005995 5.3e-40 168.3 292 40.8
AUR62028146 Chenopodium quinoa HOM05D004749 ORTHO05D005995 6.9e-40 167.9 285 41.4
AUR62041770 Chenopodium quinoa HOM05D004749 ORTHO05D005995 6.9e-40 167.9 285 41.4
Peaxi162Scf00074g02033 Petunia axillaris HOM05D004749 ORTHO05D005995 6.9e-40 167.9 289 41.5
Manes.08G074300 Manihot esculenta HOM05D004749 ORTHO05D005995 9.1e-40 167.5 290 41.0
AUR62005917 Chenopodium quinoa HOM05D004749 ORTHO05D005995 1.5e-39 166.8 290 40.7
Sc17g0002650 Simmondsia chinensis HOM05D004749 ORTHO05D005995 1.5e-39 166.8 290 41.0
Lju912A2T64 Lonicera japonica HOM05D004749 ORTHO05D005995 2.6e-39 166.0 271 43.5
AL7G32130 Arabidopsis lyrata HOM05D004749 ORTHO05D005995 2.9e-38 162.5 290 39.3
BcaC01g00741 Brassica carinata HOM05D004749 ORTHO05D005995 3.8e-38 162.2 272 41.2
vmacro12071 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 5.0e-38 161.8 330 37.3
Eucgr.K01628 Eucalyptus grandis HOM05D004749 ORTHO05D005995 6.5e-38 161.4 290 39.3
AT4G21800 Arabidopsis thaliana HOM05D004749 ORTHO05D005995 1.1e-37 160.6 290 39.0
DCAR_026992 Daucus carota HOM05D004749 ORTHO05D005995 2.5e-37 159.5 289 40.5
CARHR228550 Cardamine hirsuta HOM05D004749 ORTHO05D005995 3.2e-37 159.1 290 38.6
BolC3t20652H Brassica oleracea HOM05D004749 ORTHO05D005995 2.1e-36 156.4 214 45.3
Thhalv10025484m.g Eutrema salsugineum HOM05D004749 ORTHO05D005995 3.0e-35 152.5 290 37.9
BcaC09g51199 Brassica carinata HOM05D004749 ORTHO05D005995 3.9e-35 152.1 290 37.6
BolC1t01536H Brassica oleracea HOM05D004749 ORTHO05D005995 3.9e-35 152.1 290 37.2
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 8.8e-35 151.0 290 36.9
BraA01t01257Z Brassica rapa HOM05D004749 ORTHO05D005995 8.8e-35 151.0 290 36.9
BraA08t33522Z Brassica rapa HOM05D004749 ORTHO05D005995 8.8e-35 151.0 242 42.1
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 2.0e-34 149.8 290 37.2
C03p83720 Brassica napus HOM05D004749 ORTHO05D005995 5.7e-34 148.3 231 43.3
Pp3c8_16870 Physcomitrium patens HOM05D004749 ORTHO05D005995 1.7e-33 146.7 284 37.0
BcaNung02248 Brassica carinata HOM05D004749 ORTHO05D005995 2.8e-33 146.0 290 36.6
ATR0693G032 Amborella trichopoda HOM05D004749 ORTHO05D005995 1.8e-32 143.3 296 36.5
HanXRQChr10g0314441 Helianthus annuus HOM05D004749 ORTHO05D005995 1.8e-32 143.3 243 42.0
vmacro15173 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 9.1e-32 141.0 347 34.0
Dinv15143 Davidia involucrata HOM05D004749 ORTHO05D005995 2.6e-31 139.4 244 39.8
HPP92_008928 Vanilla planifolia HOM05D004749 ORTHO05D005995 1.0e-30 137.5 172 49.4
SalBow7G1269 Salvia bowleyana HOM05D004749 ORTHO05D005995 3.8e-30 135.6 244 38.9
Aa31LG6G3810 Aethionema arabicum HOM05D004749 ORTHO05D005995 5.0e-30 135.2 244 37.3
Hma1.2p1_0078F.1_g039880 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 8.5e-30 134.4 115 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1659 Anthoceros agrestis HOM05D004749 ORTHO05D005995 2.7e-28 129.4 282 33.0
A08p15460 Brassica napus HOM05D004749 ORTHO05D005995 2.3e-27 126.3 150 51.3
DCAR_030456 Daucus carota HOM05D004749 ORTHO05D005995 3.0e-27 125.9 290 33.4
SMO271G0158 Selaginella moellendorffii HOM05D004749 ORTHO05D005995 4.4e-26 122.1 271 34.3
Psat1g194120 Pisum sativum HOM05D002906 ORTHO05D003211 1.7e-25 120.2 163 46.0
unitig_578.g15957 Utricularia gibba HOM05D004749 ORTHO05D005995 4.8e-25 118.6 115 60.0
Lj6C561G5 Lonicera japonica HOM05D004749 ORTHO05D005995 1.0e-22 110.9 172 42.4
Mapoly0080s0030 Marchantia polymorpha HOM05D004749 ORTHO05D005995 8.5e-22 107.8 118 48.3
CBR_g44475 Chara braunii HOM05D004749 ORTHO05D005995 1.5e-21 107.1 244 32.8
Lj6A693T62 Lonicera japonica HOM05D004749 ORTHO05D005995 2.5e-21 106.3 119 54.6
Cre06.g267150 Chlamydomonas reinhardtii HOM05D004749 ORTHO05D005995 1.2e-20 104.0 283 30.0
unitig_578.g15956 Utricularia gibba HOM05D004749 ORTHO05D005995 1.2e-20 104.0 66 75.8
HPP92_008940 Vanilla planifolia HOM05D004749 ORTHO05D005995 2.7e-20 102.8 66 74.2
arahy.Tifrunner.gnm1.ann1.08UNPH Arachis hypogaea HOM05D004749 ORTHO05D005995 8.0e-20 101.3 66 72.7
arahy.Tifrunner.gnm1.ann1.3R6CDR Arachis hypogaea HOM05D004749 ORTHO05D005995 8.0e-20 101.3 66 72.7
MCO13G184 Micromonas commoda HOM05D004749 ORTHO05D005995 2.3e-19 99.8 283 29.0
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 6.8e-19 98.2 66 72.7
PSO063G4024 Papaver somniferum HOM05D004749 ORTHO05D005995 6.8e-19 98.2 201 35.8
Ah.13g071260 Amaranthus hybridus HOM05D004749 ORTHO05D005995 7.5e-18 94.7 64 71.9
PRCOL_00000431 Prasinoderma coloniale HOM05D004749 ORTHO05D005995 7.5e-18 94.7 314 27.1
CSS0038246 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.7e-17 93.6 114 52.6
Cfa026321 Carpinus fangiana HOM05D004749 ORTHO05D005995 2.2e-14 83.2 66 59.1
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 3.2e-13 79.3 95 52.6
Haze_27364 Corylus avellana HOM05D004749 ORTHO05D005995 1.2e-12 77.4 68 48.5
MELO3C012760.2 Cucumis melo HOM05D004749 ORTHO05D034260 8.0e-12 74.7 50 78.0
HanXRQChr08g0212681 Helianthus annuus HOM05D004749 ORTHO05D005995 8.0e-12 74.7 69 58.0
CDE08G0804 Ceratophyllum demersum HOM05D004749 ORTHO05D034260 3.4e-10 69.3 66 57.6
Hma1.2p1_0013F.1_g008320 Hydrangea macrophylla HOM05D004749 ORTHO05D043482 5.7e-10 68.6 44 77.3
CARHR228600 Cardamine hirsuta HOM05D004749 ORTHO05D043482 1.3e-09 67.4 45 71.1
CSS0044945 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 2.7e-07 59.7 113 40.7
SEGI_09812 Sequoiadendron giganteum HOM05D002283 ORTHO05D005725 2.9e-06 56.2 91 34.1
Aa31sc134G10 Aethionema arabicum HOM05D002283 ORTHO05D005725 3.8e-06 55.8 94 35.1


User provided reference genes

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