Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 6.0e-129 464.2 231 100.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 5.5e-114 414.5 231 88.7
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.7e-102 376.3 231 81.4
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 2.8e-102 375.6 231 81.0
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.7e-102 375.2 231 81.0
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.5e-100 368.6 231 79.2
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 5.9e-100 367.9 230 80.4
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.8e-99 365.2 231 80.5
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 8.5e-99 364.0 220 81.8
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.5e-95 353.2 231 77.9
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.1e-93 347.1 220 78.2
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 9.1e-93 344.0 231 74.0
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.0e-92 342.8 288 63.9
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 2.0e-92 342.8 231 74.0
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 3.5e-92 342.0 231 73.2
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.3e-91 340.1 209 78.5
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.7e-91 339.7 220 74.5
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.2e-91 339.3 220 76.8
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.8e-91 338.6 220 75.9
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 5.0e-91 338.2 220 76.4
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 5.0e-91 338.2 220 76.4
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.9e-90 336.3 220 76.4
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.9e-90 336.3 220 75.0
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 4.2e-90 335.1 233 71.7
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.6e-89 333.2 220 75.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.7e-89 332.4 221 74.7
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.7e-89 332.4 220 75.5
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 3.6e-89 332.0 220 75.0
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 6.1e-89 331.3 220 75.0
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.0e-88 330.5 221 74.7
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 2.3e-88 329.3 220 74.1
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.2e-87 327.0 220 72.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.5e-87 326.6 219 72.1
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 2.0e-87 326.2 220 74.1
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.6e-87 325.9 221 71.0
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 2.6e-87 325.9 220 73.6
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 7.5e-87 324.3 221 73.8
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 6.3e-86 321.2 233 70.4
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.1e-85 320.5 221 73.3
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 2.4e-85 319.3 231 68.4
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.6e-84 316.6 220 71.4
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 3.8e-83 312.0 214 69.6
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 5.0e-83 311.6 220 70.0
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 8.6e-83 310.8 220 70.9
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 8.6e-83 310.8 220 70.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 8.6e-83 310.8 204 74.0
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.1e-82 310.5 218 67.4
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.5e-82 310.1 220 70.9
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.5e-82 310.1 219 69.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 3.3e-82 308.9 231 66.7
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 7.2e-82 307.8 220 70.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 9.5e-82 307.4 220 69.5
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-81 307.0 217 70.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.2e-81 307.0 221 69.2
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 2.1e-81 306.2 221 68.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.8e-81 305.8 220 68.6
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.8e-81 305.8 217 69.6
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 4.7e-81 305.1 217 69.1
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 8.0e-81 304.3 217 68.7
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 8.0e-81 304.3 220 70.0
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 8.0e-81 304.3 204 72.1
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 8.0e-81 304.3 220 70.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.0e-80 303.9 196 75.5
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.0e-80 303.9 209 67.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.0e-80 303.9 221 67.0
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.0e-80 303.9 220 67.7
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.4e-80 303.5 221 68.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.4e-80 303.5 220 68.6
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.8e-80 303.1 221 68.8
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 1.8e-80 303.1 220 68.6
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 2.3e-80 302.8 221 69.2
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 3.0e-80 302.4 221 68.8
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 3.0e-80 302.4 221 68.8
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 3.0e-80 302.4 220 69.1
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 3.0e-80 302.4 221 68.3
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 4.0e-80 302.0 208 67.8
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.0e-80 302.0 220 69.5
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 6.8e-80 301.2 220 68.2
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 8.9e-80 300.8 218 65.6
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.5e-79 300.1 204 69.1
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.5e-79 300.1 217 68.7
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.6e-79 299.3 209 66.5
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.3e-78 297.0 216 68.5
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.7e-78 296.6 226 66.8
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.7e-78 295.4 220 63.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 2.4e-77 292.7 217 68.7
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.4e-77 292.7 212 69.8
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.4e-77 292.7 203 70.4
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 5.9e-76 288.1 220 65.0
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 5.9e-76 288.1 220 65.0
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.3e-75 287.0 214 67.3
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 5.0e-75 285.0 214 66.4
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 4.3e-74 282.0 165 87.9
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 7.3e-74 281.2 170 80.0
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 7.3e-74 281.2 200 63.5
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.2e-73 280.4 220 63.2
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 3.6e-73 278.9 204 71.1
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 3.6e-73 278.9 222 62.2
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 4.7e-73 278.5 180 78.3
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-71 273.5 199 68.8
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 4.4e-71 271.9 206 65.0
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.3e-70 270.4 187 73.8
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.2e-70 269.6 202 60.4
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.7e-70 268.9 204 62.7
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.7e-70 268.9 204 62.7
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 3.2e-69 265.8 221 63.8
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 5.4e-69 265.0 207 58.9
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.2e-68 263.8 205 61.0
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.6e-68 263.5 217 56.2
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 4.6e-68 261.9 208 66.3
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.6e-68 261.9 205 60.5
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.8e-68 261.2 205 60.0
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-67 258.8 217 61.8
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.1e-66 257.3 173 74.0
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 2.5e-66 256.1 178 72.5
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 5.6e-66 255.0 210 60.5
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 2.1e-65 253.1 217 61.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.3e-64 249.6 181 68.0
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 7.5e-63 244.6 167 70.1
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.4e-62 241.5 154 79.2
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.9e-61 240.0 155 74.8
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 4.1e-61 238.8 207 61.8
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 3.5e-60 235.7 220 58.6
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 7.8e-60 234.6 218 54.1
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 8.6e-59 231.1 231 56.3
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.5e-58 230.3 208 54.3
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.9e-58 229.9 170 61.2
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 5.2e-56 221.9 218 56.9
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.4e-55 218.8 207 53.6
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.9e-54 216.1 205 52.7
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.9e-54 215.3 201 51.7
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.9e-53 213.4 215 53.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 3.0e-51 206.1 215 45.1
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.1e-48 196.1 218 52.8
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.5e-47 193.7 152 55.9
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.2e-41 174.1 109 75.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 4.7e-41 172.2 206 43.2
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 6.2e-41 171.8 112 79.5
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 9.0e-40 167.9 200 45.0
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.2e-39 167.5 215 39.1
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.4e-39 165.6 200 45.5
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.1e-36 156.8 185 51.4
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.7e-36 156.4 202 41.1
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-35 154.1 304 31.2
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.0e-35 152.9 96 72.9
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.5e-34 150.6 130 63.1
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 5.6e-34 148.7 90 76.7
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 7.6e-31 138.3 203 37.4
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 6.4e-30 135.2 203 36.5
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 3.5e-28 129.4 128 47.7
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 8.1e-25 118.2 82 69.5
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.4e-24 117.5 90 62.2
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 2.4e-24 116.7 82 62.2
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.9e-18 97.1 200 37.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.5e-13 79.0 68 58.8
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 7.1e-13 78.6 85 44.7
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 2.2e-09 67.0 45 66.7
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.3e-09 65.5 43 76.7
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.1e-08 64.7 42 71.4


User provided reference genes

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