Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 8.2e-112 407.1 215 100.0
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 6.1e-99 364.4 215 90.7
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 2.3e-53 213.0 204 59.3
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 4.3e-44 182.2 205 51.7
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.8e-43 179.5 217 50.7
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 2.6e-41 172.9 205 51.2
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.7e-40 170.2 205 51.2
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.4e-40 168.3 202 52.5
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 1.4e-39 167.2 202 52.0
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.4e-39 167.2 202 52.0
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 2.7e-38 162.9 201 50.2
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 3.5e-38 162.5 222 51.4
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.7e-37 160.2 212 48.6
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 3.0e-37 159.5 198 48.0
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 3.9e-37 159.1 154 56.5
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 1.1e-36 157.5 199 47.2
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 7.3e-36 154.8 203 49.3
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 9.5e-36 154.5 209 46.9
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 2.1e-35 153.3 208 47.6
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 2.1e-35 153.3 219 44.3
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.1e-35 153.3 203 46.8
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 4.7e-35 152.1 189 50.3
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 4.7e-35 152.1 202 49.0
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.1e-34 151.0 201 47.8
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.8e-34 150.2 198 48.0
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.2e-33 147.5 211 46.9
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.6e-33 146.4 201 47.8
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 5.8e-33 145.2 199 46.7
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 1.7e-32 143.7 219 44.3
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 2.2e-32 143.3 204 44.1
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 2.2e-32 143.3 204 44.6
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 2.2e-32 143.3 203 44.8
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 6.4e-32 141.7 201 44.3
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 8.4e-32 141.4 203 44.8
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 8.4e-32 141.4 205 45.9
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 8.4e-32 141.4 228 43.0
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.1e-31 141.0 210 46.2
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 3.2e-31 139.4 205 47.3
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 4.1e-31 139.0 199 42.7
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 7.1e-31 138.3 205 45.4
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.2e-30 137.5 198 44.9
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 2.1e-30 136.7 205 43.9
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 2.7e-30 136.3 204 46.6
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.7e-30 136.3 204 43.1
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 3.5e-30 136.0 203 41.9
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 3.5e-30 136.0 204 47.5
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 3.5e-30 136.0 204 42.6
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.6e-30 135.6 204 45.6
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 6.0e-30 135.2 207 45.4
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 6.0e-30 135.2 214 43.9
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 6.0e-30 135.2 144 51.4
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 6.0e-30 135.2 203 42.9
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 7.8e-30 134.8 204 45.1
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 1.3e-29 134.0 208 44.7
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 1.3e-29 134.0 188 43.1
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 1.7e-29 133.7 201 45.3
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.3e-29 133.3 206 41.7
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.3e-29 133.3 198 44.4
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 3.0e-29 132.9 196 44.4
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 3.0e-29 132.9 209 45.0
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 8.6e-29 131.3 180 46.7
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.1e-28 131.0 207 43.0
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 1.5e-28 130.6 215 42.3
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.9e-28 130.2 199 43.2
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 1.9e-28 130.2 198 44.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.5e-28 129.8 188 42.0
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 2.5e-28 129.8 258 38.4
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 9.6e-28 127.9 145 49.7
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.2e-27 127.5 188 41.5
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 2.6e-25 119.8 207 41.1
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 5.8e-25 118.6 199 38.7
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.3e-24 117.5 161 46.0
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 4.9e-24 115.5 222 37.4
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 6.4e-24 115.2 159 45.9
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 8.4e-24 114.8 153 43.8
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.1e-23 114.4 161 44.7
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 1.1e-23 114.4 221 38.5
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 4.2e-23 112.5 253 35.2
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 5.4e-23 112.1 200 41.5
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.6e-22 110.5 200 41.0
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.6e-22 110.5 212 38.2
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 2.7e-22 109.8 200 41.0
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 3.5e-22 109.4 156 45.5
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 4.6e-22 109.0 194 40.2
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.0e-21 107.8 112 52.7
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 1.7e-21 107.1 196 36.7
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.7e-21 107.1 186 38.2
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.0e-21 106.3 146 48.6
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 6.6e-21 105.1 207 39.1
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.1e-20 104.4 195 40.0
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 1.1e-20 104.4 142 49.3
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.9e-20 103.6 199 38.7
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 2.5e-20 103.2 203 36.9
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 3.3e-20 102.8 141 43.3
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 4.3e-20 102.4 141 43.3
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 1.3e-19 100.9 180 37.2
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 4.8e-19 99.0 196 36.7
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 8.1e-19 98.2 213 36.2
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 8.1e-19 98.2 213 36.2
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 1.4e-18 97.4 189 38.1
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 9.0e-18 94.7 210 34.3
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 9.0e-18 94.7 142 42.3
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 4.5e-17 92.4 146 39.7
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 9.9e-17 91.3 207 37.7
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.3e-16 90.9 189 35.4
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 3.8e-16 89.4 207 37.2
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 3.8e-16 89.4 183 38.8
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 7.1e-15 85.1 196 36.7
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 1.6e-14 84.0 121 43.8
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.1e-14 83.6 95 50.5
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 6.0e-14 82.0 213 33.3
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 1.8e-13 80.5 166 38.0
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.1e-12 77.8 163 35.0
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 1.5e-12 77.4 89 49.4
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 2.5e-12 76.6 148 35.1
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.3e-12 76.3 163 34.4
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 4.3e-12 75.9 206 32.0
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 5.3e-10 68.9 146 30.8
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 1.5e-09 67.4 215 27.4
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.0e-09 67.0 151 33.8
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 1.3e-08 64.3 57 54.4
Haze_23070 Corylus avellana HOM05D005900 ORTHO05D007306 2.2e-08 63.5 155 35.5
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 8.4e-08 61.6 142 34.5
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 5.5e-07 58.9 156 26.3


User provided reference genes

Program Settings