Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 2.6e-164 582.0 300 100.0
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 2.5e-135 485.7 301 84.4
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 8.1e-118 427.6 294 76.9
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 2.2e-115 419.5 273 77.3
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.8e-115 418.7 273 77.7
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 9.3e-114 414.1 300 72.7
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.1e-113 412.9 299 72.6
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 4.8e-110 401.7 300 70.3
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 4.8e-110 401.7 297 70.7
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 8.2e-110 401.0 304 70.1
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.8e-109 399.8 302 67.9
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 6.9e-109 397.9 276 72.1
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 4.5e-108 395.2 276 71.7
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 6.5e-107 391.3 279 71.3
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.9e-106 389.8 298 69.1
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.9e-106 389.8 294 68.4
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.5e-106 389.4 293 70.6
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 5.5e-106 388.3 289 69.2
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 9.3e-106 387.5 260 74.6
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.6e-105 386.7 294 68.7
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.6e-105 385.2 262 72.5
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.6e-105 385.2 262 72.5
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 4.6e-105 385.2 294 69.4
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 7.9e-105 384.4 294 68.0
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.9e-105 384.4 268 72.8
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.3e-104 383.6 292 68.8
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 3.0e-104 382.5 275 70.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 5.1e-104 381.7 287 69.0
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 5.1e-104 381.7 292 68.5
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.1e-103 380.6 305 65.6
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.1e-103 380.6 289 67.5
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.1e-103 380.6 264 71.6
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.9e-103 379.8 257 73.2
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 2.8e-102 375.9 230 81.7
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.8e-102 375.9 248 74.6
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 3.7e-102 375.6 261 72.8
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 3.7e-102 375.6 252 74.2
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 8.2e-102 374.4 304 64.8
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.1e-101 374.0 304 64.8
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.8e-101 373.2 289 67.8
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.8e-101 373.2 304 67.4
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 3.1e-101 372.5 293 68.6
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 4.1e-101 372.1 275 69.8
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 9.0e-101 370.9 293 68.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 9.0e-101 370.9 237 75.9
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 2.6e-100 369.4 270 70.7
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 5.9e-100 368.2 299 64.9
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 5.9e-100 368.2 247 70.4
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 7.7e-100 367.9 247 72.5
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 7.7e-100 367.9 263 68.8
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.0e-99 367.5 294 68.7
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.0e-99 367.5 246 71.1
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.3e-99 367.1 239 75.7
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.3e-99 367.1 247 70.0
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 2.2e-99 366.3 284 66.5
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 3.8e-99 365.5 307 64.2
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 3.8e-99 365.5 248 71.0
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 6.5e-99 364.8 294 67.0
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 6.5e-99 364.8 294 64.3
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 8.5e-99 364.4 253 72.3
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.4e-98 363.6 294 65.0
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 4.2e-98 362.1 294 67.0
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 4.2e-98 362.1 294 67.7
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 5.5e-98 361.7 290 64.8
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 5.5e-98 361.7 252 70.2
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 5.5e-98 361.7 349 59.3
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.1e-97 359.8 295 62.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 6.1e-97 358.2 272 68.8
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 7.9e-97 357.8 243 72.8
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.4e-96 357.1 274 65.0
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 3.0e-96 355.9 294 65.0
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 3.0e-96 355.9 294 64.3
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.0e-96 355.9 296 63.2
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 3.0e-96 355.9 253 71.5
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 3.9e-96 355.5 246 70.3
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 6.7e-96 354.8 294 65.0
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 1.1e-95 354.0 254 70.5
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 3.3e-95 352.4 273 65.6
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.3e-94 350.5 253 70.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.2e-94 349.7 276 68.1
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.7e-94 349.0 292 62.3
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 6.3e-94 348.2 286 60.5
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.8e-93 346.7 219 76.3
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.4e-93 346.3 246 69.1
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.1e-93 345.9 279 64.2
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 4.5e-92 342.0 290 61.4
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 6.5e-91 338.2 286 60.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.2e-89 334.0 293 59.7
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.3e-88 329.7 294 60.5
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.0e-88 329.3 256 68.4
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.1e-87 327.4 254 68.1
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 2.6e-87 326.2 225 71.1
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 4.4e-87 325.5 258 65.9
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.7e-86 323.6 247 67.6
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.1e-85 319.3 296 57.4
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.0e-83 314.3 231 71.0
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 6.5e-83 311.6 257 64.2
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 6.5e-83 311.6 204 76.5
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 6.1e-81 305.1 246 63.0
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 2.3e-80 303.1 277 55.2
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 3.3e-79 299.3 208 68.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 2.2e-78 296.6 244 61.5
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-71 274.2 206 66.5
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 9.8e-71 271.2 286 53.1
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 4.8e-70 268.9 257 54.9
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 5.4e-69 265.4 180 73.3
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 9.8e-63 244.6 300 48.3
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.6e-60 237.3 149 78.5
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.9e-50 203.8 150 69.3
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 2.9e-46 189.9 217 47.5
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 5.0e-43 179.1 275 39.6
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 3.4e-39 166.4 139 62.6
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.1e-37 161.4 214 39.3
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 5.1e-35 152.5 86 86.0
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 7.1e-29 132.1 137 54.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.1e-24 118.2 69 84.1
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 3.8e-22 109.8 83 63.9
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 7.8e-20 102.1 56 83.9
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 1.0e-19 101.7 111 52.3
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.3e-19 101.3 68 67.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.5e-18 97.8 64 75.0
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.4e-16 90.5 64 70.3
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 5.3e-16 89.4 63 65.1
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 9.0e-16 88.6 169 34.3
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 2.9e-14 83.6 51 78.4
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 3.2e-13 80.1 170 34.7
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 5.4e-13 79.3 49 77.6
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.6e-12 77.8 69 58.0
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 4.6e-12 76.3 53 69.8
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 6.0e-12 75.9 47 76.6
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.1e-10 71.6 103 38.8
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 8.1e-09 65.5 43 65.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.5e-07 61.2 83 41.0
RcHm_v2.0_Chr1g0313101 Rosa chinensis HOM05D005950 ORTHO05D342078 3.8e-06 56.6 36 69.4


User provided reference genes

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