Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 3.7e-134 481.5 234 100.0
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 9.8e-119 430.3 235 88.5
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 1.5e-111 406.4 234 84.2
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 2.0e-103 379.4 235 76.6
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 1.3e-102 376.7 235 76.2
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 9.2e-101 370.5 232 75.4
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 4.6e-100 368.2 235 76.6
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 1.6e-92 343.2 234 72.2
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 3.5e-92 342.0 238 71.0
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 6.0e-92 341.3 239 71.1
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 1.7e-91 339.7 238 70.2
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 3.3e-90 335.5 237 70.0
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 3.3e-90 335.5 245 67.8
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 4.7e-89 331.6 235 70.2
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 2.4e-88 329.3 238 69.3
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 5.2e-88 328.2 239 68.6
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 8.9e-88 327.4 240 67.5
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 4.4e-87 325.1 237 68.4
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 4.4e-87 325.1 246 64.6
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 2.1e-84 316.2 240 66.7
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 2.1e-84 316.2 236 67.8
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 2.7e-84 315.8 237 64.6
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 2.7e-84 315.8 240 67.1
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 4.6e-84 315.1 236 66.5
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 6.0e-84 314.7 241 67.2
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 1.3e-83 313.5 237 65.4
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 5.3e-80 301.6 204 71.6
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 9.0e-80 300.8 251 61.4
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 1.5e-79 300.1 240 61.2
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 4.5e-79 298.5 209 69.4
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 1.9e-77 293.1 245 62.9
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 4.2e-77 292.0 235 60.9
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 7.1e-77 291.2 232 60.3
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 7.1e-77 291.2 235 60.9
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 2.1e-76 289.7 227 63.0
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 3.5e-76 288.9 239 61.5
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 7.9e-76 287.7 240 61.2
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 5.1e-75 285.0 237 60.3
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 2.5e-74 282.7 238 60.5
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 3.3e-74 282.3 232 61.6
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 1.3e-73 280.4 238 60.9
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 2.1e-73 279.6 198 70.2
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 2.8e-73 279.3 235 61.3
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 6.2e-73 278.1 234 60.7
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 2.4e-72 276.2 214 62.6
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 3.1e-72 275.8 239 57.7
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 4.0e-72 275.4 242 58.3
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 4.0e-72 275.4 241 57.3
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 4.5e-71 271.9 251 57.4
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 5.8e-71 271.6 224 60.7
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 1.1e-69 267.3 240 59.2
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 1.4e-69 266.9 237 57.4
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 1.9e-69 266.5 224 61.2
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 2.4e-69 266.2 186 69.9
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 4.2e-69 265.4 226 59.7
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 5.5e-69 265.0 234 54.3
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 1.6e-68 263.5 251 54.2
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 3.5e-68 262.3 230 57.4
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 4.6e-68 261.9 266 54.1
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 6.0e-68 261.5 282 51.1
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 7.9e-68 261.2 231 55.8
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 1.3e-67 260.4 229 55.9
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 2.3e-67 259.6 230 59.6
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 3.0e-67 259.2 181 69.6
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 3.0e-67 259.2 234 57.3
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 1.1e-66 257.3 239 53.6
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 1.5e-66 256.9 214 59.3
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 3.3e-66 255.8 236 56.8
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 1.3e-65 253.8 214 58.4
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 1.6e-65 253.4 232 55.6
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 2.1e-65 253.1 235 54.5
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 4.8e-65 251.9 212 59.0
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 1.1e-64 250.8 233 54.9
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 2.4e-64 249.6 214 57.0
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 5.3e-64 248.4 191 61.8
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 3.4e-63 245.7 232 54.7
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 4.5e-63 245.4 214 59.8
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 4.5e-63 245.4 203 62.1
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 4.5e-63 245.4 203 62.1
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 2.2e-62 243.0 214 59.3
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 9.3e-61 237.7 238 52.5
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 5.7e-58 228.4 200 59.5
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 9.6e-58 227.6 170 67.1
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 1.6e-57 226.9 214 53.7
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 2.1e-57 226.5 176 65.3
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 2.4e-56 223.0 200 55.5
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 2.4e-56 223.0 187 59.4
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 1.2e-55 220.7 150 68.7
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 3.8e-54 215.7 239 52.7
arahy.Tifrunner.gnm1.ann1.ZM7ZD1 Arachis hypogaea HOM05D006411 ORTHO05D007563 2.5e-53 213.0 217 51.2
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 9.3e-53 211.1 172 60.5
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 1.0e-51 207.6 173 59.5
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.3e-51 207.2 162 61.7
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 1.8e-51 206.8 219 52.1
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 5.1e-51 205.3 143 69.2
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 3.7e-49 199.1 200 53.5
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 2.5e-45 186.4 214 45.3
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 1.7e-41 173.7 151 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2329 Anthoceros agrestis HOM05D014047 ORTHO05D007563 8.2e-41 171.4 193 47.2
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 1.1e-40 171.0 141 61.0
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 1.4e-40 170.6 159 55.3
FvH4_4g07260 Fragaria vesca HOM05D006411 ORTHO05D007563 6.9e-40 168.3 109 71.6
CBR_g41204 Chara braunii HOM05D006411 ORTHO05D007563 4.5e-39 165.6 241 41.1
Mapoly0164s0017 Marchantia polymorpha HOM05D006411 ORTHO05D007563 2.3e-35 153.3 209 42.6
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 3.0e-27 126.3 128 50.0
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 6.5e-22 108.6 71 70.4
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 8.5e-22 108.2 60 80.0
SMO119G0262 Selaginella moellendorffii HOM05D006411 ORTHO05D007563 5.5e-21 105.5 143 37.8
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 6.1e-20 102.1 69 69.6
Nn2g15434 Nelumbo nucifera HOM05D006411 ORTHO05D007563 2.2e-17 93.6 178 34.8
Nn7g35833 Nelumbo nucifera HOM05D006411 ORTHO05D007563 7.0e-16 88.6 72 61.1
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 3.2e-13 79.7 74 52.7
MCO06G175 Micromonas commoda HOM05D006411 ORTHO05D007563 2.8e-12 76.6 182 29.1
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 1.7e-09 67.4 151 31.8
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 2.2e-09 67.0 75 52.0
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 2.8e-09 66.6 37 70.3
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 8.3e-09 65.1 38 65.8
MBI04_g21533_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 1.4e-08 64.3 36 69.4
SalBow3G2205 Salvia bowleyana HOM05D006411 ORTHO05D007563 1.2e-07 61.2 80 46.2
CAN.G1161.15 Capsicum annuum HOM05D000064 ORTHO05D007563 1.0e-06 58.2 41 61.0


User provided reference genes

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