Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.4e-195 685.3 335 100.0
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 4.2e-147 525.0 297 87.9
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 7.7e-133 477.6 301 80.1
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.0e-124 450.7 303 75.6
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 3.1e-118 429.1 302 73.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 9.1e-110 401.0 295 67.1
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 3.5e-109 399.1 312 66.0
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.5e-107 391.7 300 67.7
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 6.1e-106 388.3 291 67.7
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 6.1e-106 388.3 295 68.5
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.8e-105 386.7 291 67.0
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 3.0e-105 386.0 291 66.7
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.6e-104 382.9 290 67.2
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.7e-103 380.2 291 66.3
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 2.8e-103 379.4 291 65.6
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.8e-103 379.4 295 66.8
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.8e-102 376.7 305 63.6
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 7.0e-102 374.8 291 65.3
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.5e-101 372.1 290 66.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.3e-100 370.5 290 65.5
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 3.2e-99 365.9 299 63.2
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.1e-98 363.2 300 63.7
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.0e-97 359.0 278 65.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 4.0e-97 359.0 301 61.1
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 2.0e-96 356.7 307 61.6
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.0e-96 356.7 294 61.9
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.4e-96 355.5 296 62.2
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 7.5e-96 354.8 300 59.7
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 8.3e-95 351.3 299 61.9
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 3.1e-94 349.4 305 60.3
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.0e-93 346.7 288 61.1
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.7e-93 346.3 294 60.9
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 4.5e-93 345.5 294 61.6
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 7.8e-93 344.7 288 60.8
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 7.8e-93 344.7 292 60.6
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.0e-92 344.4 296 58.8
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.3e-92 344.0 297 63.0
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.7e-92 343.6 291 60.8
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.7e-92 343.6 304 60.9
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 5.0e-92 342.0 294 60.9
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 8.6e-92 341.3 347 55.9
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.9e-91 340.1 289 59.2
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 3.3e-91 339.3 300 59.3
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 9.5e-91 337.8 288 59.0
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.6e-90 337.0 298 60.7
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.6e-90 337.0 289 59.5
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.1e-90 336.7 293 61.1
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 2.1e-90 336.7 296 60.5
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 2.8e-90 336.3 289 59.2
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 2.8e-90 336.3 293 60.4
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 3.6e-90 335.9 287 59.9
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 4.7e-90 335.5 299 57.9
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.0e-89 332.8 302 57.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 6.8e-89 331.6 302 57.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-88 330.9 292 58.6
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.5e-88 330.5 270 63.7
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.0e-88 330.1 290 58.3
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 3.4e-88 329.3 294 58.2
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 9.8e-88 327.8 289 59.2
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.9e-87 326.2 289 59.5
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 3.7e-87 325.9 307 56.0
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.4e-86 323.2 278 59.4
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 3.2e-86 322.8 304 56.9
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 5.4e-86 322.0 289 57.8
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 7.0e-86 321.6 311 55.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 3.5e-85 319.3 298 56.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 5.9e-85 318.5 298 56.4
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.0e-84 317.8 294 57.1
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 2.5e-83 313.2 291 53.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 4.3e-83 312.4 271 60.1
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.6e-82 310.5 286 57.0
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 6.2e-82 308.5 288 59.0
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.2e-81 305.4 278 56.5
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.5e-80 303.9 280 57.9
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.7e-79 300.4 270 60.0
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.4e-78 296.6 299 53.5
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 5.4e-78 295.4 294 55.1
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 7.0e-78 295.0 276 57.2
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 9.2e-78 294.7 289 55.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 4.6e-77 292.4 253 60.5
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 3.0e-76 289.7 217 66.8
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 5.6e-75 285.4 292 53.8
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 6.2e-74 282.0 174 79.3
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 4.9e-71 272.3 289 51.9
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 2.4e-70 270.0 277 52.7
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.6e-69 267.3 310 51.0
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 6.0e-69 265.4 277 53.1
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.5e-67 260.8 278 52.9
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.9e-67 260.4 345 43.5
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 6.4e-63 245.4 297 47.5
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.4e-62 242.3 279 48.7
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 2.1e-61 240.4 187 64.7
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 2.3e-60 236.9 158 70.9
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.7e-60 235.0 302 45.0
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 9.6e-59 231.5 298 45.6
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.4e-57 227.6 336 44.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 5.8e-56 222.2 298 45.6
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 7.6e-56 221.9 151 73.5
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.4e-55 218.8 342 41.8
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.4e-54 217.6 354 41.8
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 3.5e-53 213.0 278 44.2
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.8e-50 203.4 155 63.9
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.1e-49 199.9 134 70.9
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.0e-49 199.5 124 75.0
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 9.0e-49 198.4 289 43.3
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 9.9e-48 194.9 270 43.7
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 8.4e-47 191.8 280 43.2
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.1e-46 191.4 276 40.9
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.5e-45 186.4 175 56.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.5e-45 186.4 219 49.3
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 4.6e-45 186.0 295 38.3
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 4.6e-45 186.0 301 41.9
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 8.7e-44 181.8 102 83.3
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.3e-43 179.5 305 42.0
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.6e-42 177.6 290 39.3
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 9.0e-41 171.8 305 40.0
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 9.9e-40 168.3 95 81.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.2e-38 162.9 121 62.8
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.7e-37 160.2 184 49.5
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 5.1e-36 156.0 95 77.9
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 6.7e-36 155.6 292 37.7
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 3.3e-35 153.3 225 43.1
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 7.4e-35 152.1 158 51.9
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 3.4e-32 143.3 163 47.9
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.0e-31 141.7 108 64.8
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.7e-27 125.2 102 60.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.8e-26 123.6 196 39.3
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.1e-25 120.2 143 44.8
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.1e-25 120.2 144 45.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.7e-21 107.1 206 38.3
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.3e-19 99.8 55 81.8
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.6e-16 90.5 50 82.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.9e-12 76.6 108 45.4
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 2.6e-11 73.9 51 70.6
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.8e-07 60.1 71 46.5
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.5e-06 57.4 73 42.5
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.5e-06 57.4 108 38.0
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 5.5e-06 56.2 97 36.1


User provided reference genes

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