Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 2.8e-44 181.4 83 100.0
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 2.0e-37 158.7 75 94.7
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 7.4e-37 156.8 80 87.5
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 2.4e-35 151.8 73 90.4
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 4.1e-35 151.0 76 86.8
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 9.1e-35 149.8 76 86.8
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 9.1e-35 149.8 76 86.8
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 1.5e-34 149.1 69 95.7
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 2.6e-34 148.3 77 85.7
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 7.7e-34 146.7 76 86.8
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 1.0e-33 146.4 73 86.3
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.0e-33 146.4 73 86.3
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.0e-33 146.4 73 86.3
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.0e-33 146.4 73 86.3
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.0e-33 146.4 73 86.3
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 1.0e-33 146.4 76 84.2
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 1.3e-33 146.0 72 88.9
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.3e-33 146.0 74 85.1
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 1.3e-33 146.0 74 83.8
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 1.7e-33 145.6 76 84.2
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.7e-33 145.6 76 82.9
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 2.9e-33 144.8 72 87.5
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 2.9e-33 144.8 76 84.2
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 3.8e-33 144.4 76 82.9
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.8e-33 144.4 76 85.5
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 8.5e-33 143.3 69 89.9
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.1e-32 142.9 70 87.1
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.1e-32 142.9 72 86.1
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 1.1e-32 142.9 72 86.1
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 1.1e-32 142.9 73 82.2
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 1.4e-32 142.5 72 86.1
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.4e-32 142.5 72 87.5
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 1.4e-32 142.5 72 87.5
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.5e-32 141.7 83 77.1
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 2.5e-32 141.7 76 80.3
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 3.2e-32 141.4 72 86.1
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 4.2e-32 141.0 69 89.9
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 4.2e-32 141.0 70 85.7
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 4.2e-32 141.0 70 85.7
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 9.4e-32 139.8 76 81.6
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 9.4e-32 139.8 69 84.1
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 9.4e-32 139.8 69 88.4
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 1.2e-31 139.4 78 78.2
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 1.2e-31 139.4 79 75.9
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 1.6e-31 139.0 69 85.5
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 1.6e-31 139.0 70 84.3
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-31 138.7 69 87.0
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-31 138.7 69 87.0
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.1e-31 138.7 74 81.1
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 2.1e-31 138.7 80 75.0
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 4.7e-31 137.5 79 74.7
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 4.7e-31 137.5 79 74.7
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 7.9e-31 136.7 76 78.9
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 1.0e-30 136.3 69 84.1
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 1.0e-30 136.3 79 73.4
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 1.4e-30 136.0 79 73.4
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 1.4e-30 136.0 71 81.7
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.8e-30 135.6 82 72.0
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.8e-30 135.6 70 81.4
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.8e-30 135.6 69 85.5
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.8e-30 135.6 69 85.5
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.8e-30 135.6 69 85.5
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 3.0e-30 134.8 71 81.7
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 3.9e-30 134.4 69 81.2
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 5.1e-30 134.0 69 82.6
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 6.7e-30 133.7 72 81.9
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 8.8e-30 133.3 69 81.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 1.1e-29 132.9 68 80.9
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 2.0e-29 132.1 71 80.3
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 2.6e-29 131.7 79 72.2
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 4.4e-29 131.0 71 77.5
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 4.4e-29 131.0 69 81.2
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 4.4e-29 131.0 69 81.2
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 4.4e-29 131.0 69 81.2
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 4.4e-29 131.0 69 81.2
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 5.7e-29 130.6 69 81.2
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 5.7e-29 130.6 70 81.4
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 5.7e-29 130.6 72 76.4
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 7.4e-29 130.2 69 76.8
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 9.7e-29 129.8 69 79.7
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 9.7e-29 129.8 71 76.1
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 9.7e-29 129.8 69 79.7
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 9.7e-29 129.8 69 79.7
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 9.7e-29 129.8 69 79.7
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.3e-28 129.4 69 79.7
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.3e-28 129.4 69 79.7
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.3e-28 129.4 69 79.7
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.3e-28 129.4 69 79.7
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 1.3e-28 129.4 72 80.6
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.3e-28 129.4 72 80.6
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.3e-28 129.4 69 79.7
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 1.7e-28 129.0 72 75.0
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 1.7e-28 129.0 69 78.3
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.2e-28 128.6 71 77.5
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.2e-28 128.6 71 77.5
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 2.2e-28 128.6 70 80.0
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 2.2e-28 128.6 70 80.0
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 4.8e-28 127.5 74 73.0
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.1e-27 124.8 69 78.3
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 3.1e-27 124.8 69 78.3
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 2.0e-26 122.1 69 71.0
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 2.0e-26 122.1 69 75.4
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 2.6e-26 121.7 68 76.5
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 1.7e-25 119.0 69 72.5
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 2.2e-25 118.6 78 69.2
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 8.5e-25 116.7 69 73.9
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 7.2e-24 113.6 69 72.5
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 1.6e-23 112.5 75 65.3
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 2.1e-23 112.1 75 66.7
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 2.7e-23 111.7 79 63.3
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 6.1e-23 110.5 69 72.5
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 1.4e-22 109.4 69 68.1
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.1e-21 106.3 72 62.5
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 2.0e-21 105.5 70 67.1
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 6.3e-20 100.5 70 65.7
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.1e-19 99.8 75 54.7
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.7e-17 92.4 52 73.1
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 1.9e-16 89.0 69 47.8
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 2.3e-14 82.0 41 80.5
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.0e-14 81.3 55 65.5
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.0e-14 81.3 55 65.5
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 4.0e-14 81.3 67 47.8
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 2.2e-12 75.5 77 42.9
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 6.3e-12 73.9 63 47.6
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 8.5e-09 63.5 65 38.5
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 1.2e-07 59.7 47 61.7


User provided reference genes

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