Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.2e-151 539.3 336 100.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.8e-111 406.0 339 80.8
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 7.3e-91 338.2 333 71.2
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.0e-90 334.7 337 72.4
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.3e-89 333.2 334 71.6
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.4e-88 329.3 334 70.7
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 2.9e-87 326.2 334 70.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.7e-87 325.9 336 68.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.2e-86 322.8 336 68.5
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.2e-85 320.9 339 70.5
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-85 320.1 354 65.3
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.7e-85 319.7 335 69.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-85 319.7 354 65.3
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.3e-84 316.6 335 68.4
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.5e-83 313.9 346 67.1
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.5e-83 313.9 340 68.8
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.5e-83 313.2 353 65.4
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.5e-83 311.2 344 67.7
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.2e-82 310.8 340 67.1
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.6e-82 310.5 355 65.6
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.1e-82 310.1 341 66.9
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 4.0e-81 305.8 341 66.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 6.8e-81 305.1 346 63.9
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 6.8e-81 305.1 346 63.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.5e-80 303.9 337 67.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.6e-80 303.1 334 67.7
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.6e-80 303.1 334 67.7
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 9.9e-80 301.2 338 65.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.7e-79 300.4 348 64.4
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.7e-79 300.4 334 66.5
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.9e-79 299.7 345 64.6
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.9e-79 298.9 340 65.3
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.1e-78 297.7 336 65.8
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.2e-78 296.2 334 66.2
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 4.1e-78 295.8 342 66.1
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 5.4e-78 295.4 335 64.2
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.4e-78 295.4 335 65.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 7.1e-78 295.0 347 64.3
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 7.1e-78 295.0 339 65.2
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 9.2e-78 294.7 355 55.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 9.2e-78 294.7 344 64.2
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.2e-77 294.3 373 57.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 2.1e-77 293.5 290 71.0
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.7e-77 293.1 367 61.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.5e-77 292.7 367 60.8
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.6e-77 292.4 348 62.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.0e-76 291.2 347 62.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.7e-76 290.4 349 61.9
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.0e-76 289.7 341 64.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 5.1e-76 288.9 349 62.2
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 5.1e-76 288.9 349 62.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 8.6e-76 288.1 343 63.8
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.1e-75 287.7 347 62.2
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.1e-75 287.7 335 64.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.5e-75 286.6 340 62.9
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.3e-75 285.8 339 63.4
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 7.3e-75 285.0 342 63.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.2e-74 284.3 339 63.1
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.6e-74 283.9 334 59.9
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 4.7e-74 282.3 348 62.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.2e-74 282.0 334 62.3
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.1e-74 281.6 363 45.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-73 280.8 335 63.3
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.8e-73 280.4 377 58.4
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.8e-73 280.4 284 69.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.1e-73 279.6 332 63.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.0e-73 279.3 284 69.7
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 6.8e-73 278.5 394 43.7
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.2e-72 277.7 339 62.5
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 5.8e-72 275.4 346 61.8
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.8e-72 275.4 278 69.8
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.7e-71 273.9 284 69.0
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.7e-71 273.9 337 58.8
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 3.8e-71 272.7 338 60.9
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.9e-71 272.3 330 62.7
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.1e-70 271.2 346 59.8
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.4e-70 270.8 346 58.1
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-70 270.8 216 64.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.4e-70 270.8 330 61.8
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.4e-70 270.0 339 61.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.2e-70 269.6 285 69.8
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.6e-69 267.3 235 57.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.6e-69 267.3 335 54.6
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.1e-69 266.9 219 63.5
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 4.6e-69 265.8 347 59.9
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.6e-69 265.8 336 61.9
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.8e-69 265.0 338 60.7
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.0e-68 263.1 228 57.9
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-67 260.4 327 62.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.5e-67 260.0 341 60.1
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 3.3e-67 259.6 330 60.6
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 4.3e-67 259.2 334 59.9
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.8e-66 256.5 308 61.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-65 254.6 339 59.6
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 3.4e-64 249.6 341 56.0
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.4e-64 249.2 321 63.6
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.6e-64 248.4 245 53.5
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.1e-61 240.4 334 53.6
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.5e-61 239.6 332 58.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.0e-61 238.8 216 56.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 7.8e-61 238.4 293 62.1
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 2.3e-60 236.9 249 51.4
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.1e-58 230.3 290 53.4
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 5.3e-57 225.7 334 56.0
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.0e-56 223.8 280 63.9
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.4e-56 223.0 165 64.8
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.8e-56 222.2 415 48.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 9.9e-56 221.5 235 72.8
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.4e-55 218.4 344 52.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 3.9e-52 209.5 291 60.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.7e-47 194.1 317 37.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 4.2e-46 189.5 338 51.5
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.1e-45 187.2 215 50.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.3e-43 179.9 191 78.5
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 5.7e-43 179.1 191 79.1
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 7.6e-40 168.7 175 51.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 2.5e-38 163.7 273 54.6
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 3.2e-38 163.3 175 49.1
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.9e-35 154.1 138 58.0
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.9e-35 154.1 242 60.3
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 5.3e-33 146.0 286 51.7
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-31 141.7 200 43.0
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-30 137.5 188 42.6
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-28 131.3 193 42.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.9e-28 129.8 120 53.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.8e-26 123.6 278 47.5
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 9.1e-25 118.6 85 67.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-24 117.5 142 85.9
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 4.5e-24 116.3 110 51.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 6.5e-23 112.5 161 74.5
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.7e-20 102.4 81 64.2
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.1e-17 93.6 128 82.8
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.0e-15 88.6 134 61.9
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.3e-15 88.2 84 53.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 8.8e-12 75.5 62 59.7
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.5e-11 74.7 42 71.4
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-11 74.7 41 80.5
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-11 74.3 122 82.0
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.1e-09 68.6 53 58.5
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.4e-09 67.4 50 60.0
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 2.9e-07 60.5 39 84.6
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 5.0e-07 59.7 56 57.1
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.2e-06 57.0 45 62.2
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 7.2e-06 55.8 57 47.4


User provided reference genes

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