Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.9e-66 255.8 135 100.0
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 2.4e-45 185.7 105 95.2
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 3.2e-37 158.7 105 81.9
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.6e-36 156.4 105 81.0
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 6.0e-36 154.5 105 80.0
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 1.0e-35 153.7 105 80.0
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.7e-35 152.9 105 79.0
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 5.1e-35 151.4 103 79.6
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 9.6e-34 147.1 106 78.3
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.4e-32 143.3 105 76.2
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 7.1e-29 131.0 105 72.4
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 4.6e-28 128.3 106 68.9
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 1.0e-27 127.1 107 66.4
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 1.9e-26 122.9 105 69.5
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.9e-26 122.9 105 68.6
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 4.3e-26 121.7 105 67.6
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 5.6e-26 121.3 107 69.2
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 1.6e-25 119.8 99 69.7
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.6e-25 119.8 105 66.7
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.6e-25 118.6 89 75.3
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 3.6e-25 118.6 113 65.5
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 8.1e-25 117.5 106 70.8
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 2.4e-24 115.9 107 66.4
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 1.2e-23 113.6 108 65.7
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 2.0e-23 112.8 105 63.8
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 2.6e-23 112.5 101 64.4
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.7e-22 109.8 106 61.3
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.1e-21 107.1 108 59.3
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 1.4e-21 106.7 108 59.3
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 3.2e-21 105.5 109 58.7
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.2e-20 103.6 108 60.2
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 3.5e-20 102.1 109 58.7
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 4.6e-20 101.7 114 57.0
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 4.6e-20 101.7 108 59.3
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.3e-19 100.1 106 59.4
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 3.0e-19 99.0 106 59.4
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 3.9e-19 98.6 108 57.4
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 1.6e-17 93.2 103 55.3
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.1e-17 92.8 104 54.8
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 2.8e-17 92.4 105 54.3
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 3.6e-17 92.0 113 57.5
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 6.2e-17 91.3 101 57.4
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 1.1e-16 90.5 107 57.0
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 1.4e-16 90.1 107 55.1
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.4e-16 90.1 111 57.7
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 1.4e-16 90.1 106 53.8
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.8e-16 89.7 109 53.2
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 4.0e-16 88.6 107 56.1
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 6.9e-16 87.8 109 52.3
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 6.9e-16 87.8 106 52.8
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 9.0e-16 87.4 109 50.5
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.2e-15 87.0 107 52.3
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 1.2e-15 87.0 110 54.5
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 1.5e-15 86.7 106 50.0
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 2.0e-15 86.3 102 51.0
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 2.0e-15 86.3 111 55.9
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 2.0e-15 86.3 106 55.7
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 3.4e-15 85.5 105 55.2
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 3.4e-15 85.5 103 51.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 5.8e-15 84.7 110 51.8
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 5.8e-15 84.7 99 52.5
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 2.2e-14 82.8 110 51.8
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 4.9e-14 81.6 110 54.5
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 4.9e-14 81.6 105 54.3
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.1e-13 80.5 101 57.4
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.4e-13 80.1 106 53.8
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.4e-13 79.3 110 50.9
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.4e-13 79.3 104 56.7
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 3.2e-13 79.0 103 52.4
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 4.2e-13 78.6 113 51.3
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 7.1e-13 77.8 107 48.6
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 7.1e-13 77.8 106 53.8
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 2.1e-12 76.3 106 50.9
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 2.7e-12 75.9 107 50.5
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 1.0e-11 73.9 106 47.2
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.3e-11 73.6 106 47.2
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 1.8e-11 73.2 106 45.3
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 1.8e-11 73.2 106 45.3
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.8e-11 73.2 111 49.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 2.3e-11 72.8 109 50.5
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.0e-11 72.4 103 45.6
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 3.0e-11 72.4 101 50.5
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 3.0e-11 72.4 100 55.0
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 3.9e-11 72.0 48 79.2
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 5.1e-11 71.6 97 50.5
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 8.7e-11 70.9 100 48.0
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 1.1e-10 70.5 106 48.1
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.5e-10 69.3 103 47.6
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.5e-10 69.3 103 47.6
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 2.5e-10 69.3 47 76.6
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 3.3e-10 68.9 48 77.1
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.6e-10 68.2 103 42.7
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 1.6e-09 66.6 105 46.7
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 2.8e-09 65.9 106 46.2
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 3.7e-09 65.5 107 50.5
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.8e-09 65.1 98 43.9
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 4.8e-09 65.1 106 46.2
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 4.8e-09 65.1 104 47.1
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 4.8e-09 65.1 105 47.6
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 6.2e-09 64.7 100 54.0
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 1.8e-08 63.2 83 48.2
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.1e-08 62.4 98 44.9
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 6.9e-08 61.2 48 68.8
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 1.5e-07 60.1 59 61.0
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 1.5e-07 60.1 100 51.0
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 2.6e-07 59.3 93 43.0
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 7.6e-07 57.8 103 40.8
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 1.0e-06 57.4 100 40.0
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.7e-06 56.6 86 43.0
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 2.9e-06 55.8 65 55.4
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 3.8e-06 55.5 91 41.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 4.9e-06 55.1 98 40.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.9e-06 55.1 101 38.6
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 6.5e-06 54.7 68 45.6
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 6.5e-06 54.7 81 45.7
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 6.5e-06 54.7 101 47.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 6.5e-06 54.7 112 41.1


User provided reference genes

Program Settings