Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 3.0e-100 368.6 203 100.0
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.7e-79 299.7 177 87.0
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 3.0e-79 298.9 207 83.6
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 8.6e-79 297.4 174 85.1
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.3e-78 295.0 162 88.9
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 1.8e-76 289.7 159 89.9
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 6.8e-76 287.7 206 75.7
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 2.0e-75 286.2 208 76.4
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 3.4e-75 285.4 207 74.9
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.4e-75 285.0 159 88.7
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 7.5e-75 284.3 207 75.8
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 3.7e-74 282.0 155 89.0
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 4.9e-74 281.6 202 74.8
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 4.9e-74 281.6 206 74.3
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 1.4e-73 280.0 206 74.3
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 9.2e-73 277.3 181 80.1
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 1.2e-72 276.9 209 72.7
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 1.2e-72 276.9 203 75.4
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 2.1e-72 276.2 175 83.4
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 3.5e-72 275.4 206 74.8
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 4.6e-72 275.0 208 77.4
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 6.0e-72 274.6 164 84.1
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 2.3e-71 272.7 212 75.0
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.5e-70 269.2 174 82.8
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.5e-70 269.2 174 82.8
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 2.5e-70 269.2 208 72.1
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 3.3e-70 268.9 201 72.1
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 5.6e-70 268.1 204 71.1
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 1.2e-69 266.9 177 79.1
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 6.2e-69 264.6 203 71.4
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 6.2e-69 264.6 208 69.7
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 2.3e-68 262.7 205 70.7
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 6.8e-68 261.2 205 69.3
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.5e-67 260.0 208 69.2
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 2.0e-67 259.6 206 69.4
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 3.4e-67 258.8 182 74.7
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 3.4e-67 258.8 206 68.9
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 3.4e-67 258.8 203 71.4
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 7.6e-67 257.7 172 77.9
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 1.3e-66 256.9 181 75.1
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 1.1e-65 253.8 181 75.7
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 1.1e-65 253.8 183 73.8
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 1.9e-65 253.1 206 68.0
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 1.9e-65 253.1 164 79.3
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 1.9e-65 253.1 164 79.3
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 3.2e-65 252.3 182 74.7
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 7.1e-65 251.1 203 70.0
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 1.6e-64 250.0 171 76.6
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.6e-64 250.0 202 71.8
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 1.6e-64 250.0 203 68.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.1e-64 249.6 163 78.5
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.1e-64 249.6 163 78.5
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 3.5e-64 248.8 175 78.9
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 4.6e-64 248.4 208 67.8
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 7.8e-64 247.7 209 67.5
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 1.7e-63 246.5 171 74.3
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 1.7e-63 246.5 207 67.6
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 2.3e-63 246.1 203 66.5
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 3.0e-63 245.7 181 72.4
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 3.0e-63 245.7 171 76.0
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 3.9e-63 245.4 175 76.0
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 8.6e-63 244.2 177 74.0
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 1.1e-62 243.8 171 74.9
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 1.5e-62 243.4 182 73.1
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 1.5e-62 243.4 206 66.5
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 1.5e-62 243.4 171 72.5
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 1.9e-62 243.0 171 75.4
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 1.9e-62 243.0 172 74.4
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 1.9e-62 243.0 209 66.5
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 4.3e-62 241.9 205 67.8
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 7.3e-62 241.1 209 66.5
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 9.6e-62 240.7 205 64.9
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 1.2e-61 240.4 159 79.9
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 3.6e-61 238.8 171 73.1
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 4.7e-61 238.4 171 74.3
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 8.1e-61 237.7 173 72.3
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.1e-60 237.3 177 73.4
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 1.8e-60 236.5 177 70.1
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 2.4e-60 236.1 144 81.2
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 5.2e-60 235.0 128 87.5
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 6.8e-60 234.6 128 87.5
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 6.8e-60 234.6 128 87.5
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 6.8e-60 234.6 162 75.3
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 2.6e-59 232.6 202 68.3
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 5.8e-59 231.5 173 71.1
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.3e-58 230.3 176 69.9
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 2.9e-58 229.2 128 86.7
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 4.2e-57 225.3 171 70.2
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 2.1e-56 223.0 207 62.8
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 6.0e-56 221.5 185 67.0
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 6.6e-55 218.0 163 69.3
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 2.1e-53 213.0 121 85.1
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 4.8e-53 211.8 115 87.0
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 8.1e-53 211.1 175 67.4
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 6.9e-52 208.0 119 83.2
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 2.4e-49 199.5 128 78.1
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 4.6e-48 195.3 130 69.2
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.7e-47 193.4 161 60.9
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 5.1e-47 191.8 113 81.4
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 3.3e-46 189.1 161 60.2
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.3e-45 187.2 175 61.1
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 4.8e-45 185.3 113 76.1
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 8.1e-45 184.5 113 77.9
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 1.4e-44 183.7 147 64.6
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 3.1e-44 182.6 124 68.5
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.5e-38 163.7 159 59.7
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.9e-38 163.3 177 54.8
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 6.9e-36 154.8 109 62.4
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 5.7e-22 108.6 127 39.4
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 4.5e-19 99.0 113 41.6
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 4.2e-17 92.4 52 80.8
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 1.2e-16 90.9 106 45.3
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 2.8e-13 79.7 129 31.8


User provided reference genes

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