Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.0e-147 525.8 270 100.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.1e-132 476.9 259 93.4
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.2e-122 442.6 259 86.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.2e-121 438.3 259 84.9
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 9.3e-121 437.2 275 85.1
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.1e-120 436.0 259 84.6
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.2e-117 424.5 269 80.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 8.1e-117 424.1 269 80.7
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.8e-116 422.9 261 82.4
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.4e-115 418.3 269 79.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.8e-114 415.2 259 81.9
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.6e-111 404.4 257 78.6
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 3.3e-110 402.1 261 77.4
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 4.3e-110 401.7 260 78.1
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 5.6e-110 401.4 259 76.4
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 9.6e-110 400.6 259 76.1
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.6e-109 399.8 259 77.6
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.1e-108 397.1 259 77.6
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.4e-108 396.0 259 76.8
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.4e-108 396.0 259 77.6
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.1e-108 395.6 259 76.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 3.1e-108 395.6 259 76.4
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.3e-108 394.8 259 77.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.5e-107 393.3 258 75.2
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.5e-107 393.3 259 74.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 5.8e-107 391.3 259 74.5
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 9.9e-107 390.6 258 75.6
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.9e-107 390.6 259 74.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 3.8e-106 388.7 258 74.0
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 6.4e-106 387.9 259 74.1
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 8.4e-106 387.5 258 76.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 8.4e-106 387.5 258 73.6
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.9e-105 386.3 244 80.7
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.9e-105 386.3 259 75.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.2e-105 385.6 259 75.3
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 4.2e-105 385.2 258 73.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 9.3e-105 384.0 256 75.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 9.3e-105 384.0 259 72.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 2.1e-104 382.9 259 73.7
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.5e-104 382.1 259 74.9
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.5e-104 382.1 259 74.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 4.6e-104 381.7 259 74.1
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.0e-103 380.6 266 74.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.3e-103 379.4 269 69.9
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.0e-103 379.0 259 74.5
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 5.1e-103 378.3 259 71.8
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.1e-102 377.1 259 76.4
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-102 377.1 259 73.4
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.5e-102 376.7 259 72.6
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-102 375.9 268 72.8
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.5e-102 375.9 261 73.2
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 3.3e-102 375.6 257 75.1
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-102 375.6 257 75.1
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-102 375.6 257 75.1
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.3e-102 375.6 254 72.4
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 4.3e-102 375.2 257 75.5
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.3e-101 373.6 266 73.3
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.8e-101 372.5 257 73.5
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 3.7e-101 372.1 257 71.2
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 6.2e-101 371.3 260 71.9
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 6.2e-101 371.3 259 71.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.1e-100 370.5 259 73.7
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.1e-100 369.0 257 73.9
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.1e-100 369.0 257 73.9
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.1e-100 369.0 257 73.9
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.1e-100 369.0 257 70.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-100 369.0 279 70.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 5.3e-100 368.2 256 72.7
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.2e-99 367.1 257 73.5
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.2e-99 367.1 258 72.1
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.6e-99 365.9 257 72.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.4e-99 365.5 257 72.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.8e-99 364.8 275 69.1
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 5.8e-99 364.8 257 73.2
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 5.8e-99 364.8 257 73.2
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 5.8e-99 364.8 259 71.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.8e-99 364.8 265 71.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 7.6e-99 364.4 257 72.0
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.0e-98 364.0 257 73.5
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.7e-98 363.2 259 71.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.9e-98 362.5 275 69.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 4.9e-98 361.7 266 69.2
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 4.9e-98 361.7 229 77.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 4.9e-98 361.7 278 67.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 6.5e-98 361.3 293 65.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.5e-98 361.3 257 72.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.4e-97 360.1 257 70.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.9e-97 359.8 254 71.7
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.2e-97 359.0 230 78.3
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.2e-96 357.1 229 76.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.6e-96 356.7 266 68.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 6.0e-96 354.8 229 76.4
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 6.0e-96 354.8 259 71.4
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.0e-95 354.0 257 71.6
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.8e-95 353.2 259 71.4
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.3e-95 352.8 266 68.0
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 3.0e-95 352.4 259 69.5
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 9.6e-94 347.4 259 68.0
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 9.6e-94 347.4 245 74.7
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 9.6e-94 347.4 258 68.6
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.8e-92 343.2 216 77.3
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.6e-91 337.8 265 68.7
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.8e-90 335.5 256 68.4
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.9e-89 333.2 266 66.2
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.5e-89 332.8 242 70.2
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 5.1e-87 325.1 243 68.7
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 6.7e-87 324.7 266 65.8
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 2.5e-86 322.8 259 64.9
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 5.7e-86 321.6 255 66.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.3e-85 320.5 252 66.7
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.0e-82 310.8 229 68.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.5e-82 308.1 265 62.3
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 6.1e-80 301.6 259 61.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.0e-79 299.3 229 66.4
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-78 297.4 229 65.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.3e-78 295.8 227 65.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 9.7e-78 294.3 188 77.7
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.1e-76 288.9 245 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.5e-75 287.0 273 53.5
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.6e-72 275.8 237 59.9
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.3e-69 267.3 277 52.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 8.2e-69 264.6 269 49.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.9e-58 229.6 210 61.9
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-56 224.2 156 70.5
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.6e-56 223.8 263 50.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-55 221.1 197 52.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.8e-55 218.0 197 51.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-54 217.6 197 51.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.6e-54 216.5 139 76.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.6e-54 216.5 197 51.3
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-50 204.5 211 58.8
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-50 204.1 137 75.9
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-49 200.3 224 55.4
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.0e-47 194.5 225 52.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.3e-45 185.3 197 46.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-41 174.5 171 56.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-40 169.1 183 49.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.2e-37 160.2 84 95.2
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.5e-33 147.5 119 64.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.5e-27 126.3 190 40.0
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.5e-27 126.3 77 80.5
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.0e-27 125.6 182 37.9
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-26 124.8 206 43.2
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.3e-25 119.8 215 41.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.6e-25 119.0 199 34.2
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-24 117.9 111 59.5
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-24 117.9 111 59.5
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.0e-22 110.5 217 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.7e-19 100.1 59 81.4
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.5e-17 93.6 58 75.9
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.3e-17 92.0 57 75.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.1e-16 90.5 58 74.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 4.7e-16 89.4 91 50.5
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-14 83.6 64 67.2
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.9e-12 77.4 54 68.5
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.5e-11 73.2 51 66.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 4.7e-08 62.8 90 43.3
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 4.0e-07 59.7 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 4.0e-07 59.7 60 53.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 1.5e-06 57.8 63 49.2


User provided reference genes

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