Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 0.0e+00 1336.2 664 100.0
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 0.0e+00 1145.6 658 87.5
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 4.2e-300 1034.2 680 78.2
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 2.7e-283 978.4 660 76.2
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.7e-275 951.8 660 73.0
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.2e-273 946.4 660 72.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.5e-273 946.0 660 73.0
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 4.5e-270 934.5 697 69.4
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.0e-269 933.3 684 70.5
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.2e-259 899.8 676 68.9
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 2.0e-257 892.5 691 68.2
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 8.3e-256 887.1 691 67.7
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 4.6e-254 881.3 692 66.6
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 2.8e-243 845.5 678 64.9
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 7.6e-241 837.4 676 63.6
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.9e-240 835.5 676 64.8
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.6e-238 829.7 675 64.0
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 5.1e-237 824.7 679 65.1
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 8.6e-237 823.9 663 65.0
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 4.3e-236 821.6 676 65.5
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 5.6e-236 821.2 674 63.4
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 9.6e-236 820.5 720 60.0
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 1.4e-234 816.6 680 63.4
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 4.4e-233 811.6 664 64.9
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 2.2e-232 809.3 677 61.9
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 4.9e-232 808.1 651 65.1
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 4.2e-231 805.1 673 62.4
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.0e-229 800.4 677 63.5
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.3e-229 800.0 683 60.5
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 3.0e-229 798.9 679 61.7
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.9e-229 798.5 673 61.8
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 6.6e-229 797.7 677 63.4
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 1.5e-228 796.6 673 62.1
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 2.5e-228 795.8 673 62.4
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 9.6e-228 793.9 673 62.1
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 2.8e-227 792.3 676 61.5
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 6.2e-227 791.2 682 61.1
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 8.1e-227 790.8 685 60.0
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.5e-225 786.6 673 60.8
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 5.8e-225 784.6 673 61.2
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 4.9e-224 781.6 677 60.4
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 2.4e-223 779.2 678 61.2
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 5.1e-221 771.5 663 61.1
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 4.8e-219 765.0 719 58.8
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 6.2e-219 764.6 679 60.2
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.1e-218 763.8 660 60.2
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 9.0e-218 760.8 678 60.0
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 2.0e-217 759.6 657 61.0
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.5e-217 758.4 681 60.2
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 9.9e-217 757.3 678 59.7
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.3e-216 756.9 659 60.4
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 4.9e-216 755.0 658 60.2
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 1.1e-215 753.8 561 67.4
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.9e-215 753.1 674 59.5
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 2.4e-215 752.7 683 59.7
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 2.4e-215 752.7 684 57.6
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 5.4e-215 751.5 699 58.8
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 7.1e-215 751.1 657 60.0
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.2e-214 750.4 658 59.9
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.6e-214 750.0 658 59.9
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.0e-213 747.3 660 58.8
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 3.0e-213 745.7 660 59.5
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 3.0e-213 745.7 658 59.1
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 8.7e-213 744.2 683 59.6
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 4.3e-212 741.9 712 57.0
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 7.4e-212 741.1 639 60.1
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 7.4e-212 741.1 675 59.9
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 4.8e-211 738.4 682 58.2
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 9.0e-210 734.2 665 57.9
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 5.8e-209 731.5 677 58.8
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 2.2e-208 729.6 653 59.6
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 3.8e-208 728.8 648 59.1
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-206 723.8 673 58.5
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 2.8e-203 712.6 652 59.5
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.2e-198 697.2 674 55.6
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 3.5e-198 695.7 680 57.5
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 8.7e-197 691.0 544 65.3
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 6.5e-192 674.9 752 50.9
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 1.4e-191 673.7 628 58.1
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 4.6e-190 668.7 680 54.9
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.0e-189 667.5 638 55.8
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 6.3e-187 658.3 675 54.4
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.1e-186 657.5 680 53.8
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.5e-169 599.4 413 71.7
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 5.5e-167 592.0 434 68.9
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 3.1e-162 576.2 680 49.6
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 7.0e-162 575.1 551 56.1
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 3.2e-159 566.2 440 67.7
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.4e-154 550.8 699 45.2
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 2.5e-151 540.0 629 48.6
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 3.6e-150 536.2 394 68.8
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 5.9e-145 518.8 592 49.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.8e-133 480.7 640 46.7
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 1.9e-130 470.7 285 80.0
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 3.0e-128 463.4 491 52.1
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 3.7e-123 446.4 508 48.6
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.7e-113 413.7 316 65.8
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 3.0e-112 410.2 458 50.2
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 1.2e-100 371.7 569 41.5
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.8e-96 357.8 253 71.9
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 4.0e-93 346.7 405 47.7
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.5e-92 344.7 263 66.9
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 3.5e-89 333.6 195 81.5
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 4.1e-85 320.1 253 68.0
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.3e-85 319.7 647 36.3
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 9.0e-85 318.9 563 35.3
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 5.9e-84 316.2 366 50.3
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.2e-83 314.3 324 52.2
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 1.1e-82 312.0 173 87.3
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.3e-80 305.1 388 43.8
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.7e-75 288.1 351 47.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.4e-74 285.0 351 46.7
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 2.0e-71 274.6 183 74.9
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 7.4e-71 272.7 313 52.7
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 8.2e-70 269.2 183 71.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 8.5e-67 259.2 368 39.9
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 1.4e-64 251.9 150 78.7
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 9.7e-63 245.7 355 40.3
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 8.0e-57 226.1 466 34.3
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.3e-54 218.8 130 80.0
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.6e-36 158.7 209 45.5
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.3e-34 149.8 224 40.6
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.2e-25 122.5 110 55.5
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 2.8e-25 121.3 151 50.3
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 4.7e-25 120.6 234 32.9
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 1.8e-24 118.6 239 34.7
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.8e-23 112.8 110 50.9
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 3.5e-20 104.4 100 50.0
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 5.2e-16 90.5 84 53.6
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 2.2e-14 85.1 110 40.9
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.2e-14 85.1 84 53.6
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.1e-13 82.8 50 86.0
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.4e-13 82.4 203 34.5
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 6.6e-11 73.6 52 69.2
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 2.1e-09 68.6 54 64.8
SEGI_20523 Sequoiadendron giganteum HOM05D005523 ORTHO05D000001 2.1e-09 68.6 99 35.4
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.5e-07 62.4 72 47.2


User provided reference genes

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