Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1059900 Malus domestica HOM05D000634 ORTHO05D000517 2.6e-29 131.3 64 100.0
MD13G1059800 Malus domestica HOM05D000634 ORTHO05D000517 2.9e-25 117.9 64 90.6
MD16G1059300 Malus domestica HOM05D000634 ORTHO05D000517 5.4e-19 97.1 64 73.4
Gohir.A13G084232 Gossypium hirsutum HOM05D000634 ORTHO05D000517 4.7e-15 84.0 64 64.1
Thecc.02G327200 Theobroma cacao HOM05D000634 ORTHO05D000517 4.7e-15 84.0 64 65.6
Thecc.02G327600 Theobroma cacao HOM05D000634 ORTHO05D000517 8.0e-15 83.2 64 64.1
Gohir.D13G083500 Gossypium hirsutum HOM05D000634 ORTHO05D000517 1.0e-14 82.8 64 62.5
Gorai.013G095300 Gossypium raimondii HOM05D000634 ORTHO05D000517 1.0e-14 82.8 64 62.5
TWI75G0732 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 1.4e-14 82.4 64 64.1
Atru.chr11.1601 Acer truncatum HOM05D000634 ORTHO05D000517 1.8e-14 82.0 64 60.9
Dinv34050 Davidia involucrata HOM05D000634 ORTHO05D000517 1.8e-14 82.0 64 60.9
Duzib251G0745 Durio zibethinus HOM05D000634 ORTHO05D000517 2.3e-14 81.6 64 60.9
CiPaw.05G123700 Carya illinoinensis HOM05D000634 ORTHO05D000517 3.1e-14 81.3 64 67.2
Ciclev10033049m.g Citrus clementina HOM05D000634 ORTHO05D000517 4.0e-14 80.9 64 64.1
Cfa008861 Carpinus fangiana HOM05D000634 ORTHO05D000517 6.8e-14 80.1 64 64.1
Prupe.1G289700 Prunus persica HOM05D000634 ORTHO05D000517 6.8e-14 80.1 64 65.6
Manes.01G026500 Manihot esculenta HOM05D000634 ORTHO05D000517 1.5e-13 79.0 64 60.9
Gohir.A03G105300 Gossypium hirsutum HOM05D000634 ORTHO05D000517 2.0e-13 78.6 64 57.8
Gorai.005G146500 Gossypium raimondii HOM05D000634 ORTHO05D000517 3.4e-13 77.8 64 57.8
Dinv20150 Davidia involucrata HOM05D000634 ORTHO05D000517 4.4e-13 77.4 60 60.0
vmacro20924 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 4.4e-13 77.4 64 57.8
Rhsim09G0125900 Rhododendron simsii HOM05D000634 ORTHO05D007695 5.8e-13 77.0 63 60.3
Actinidia16151 Actinidia chinensis HOM05D000634 ORTHO05D000517 1.3e-12 75.9 58 65.5
Cc11_g11790 Coffea canephora HOM05D000634 ORTHO05D000517 1.3e-12 75.9 64 59.4
Haze_11884 Corylus avellana HOM05D000934 ORTHO05D000746 1.3e-12 75.9 55 67.3
COL.COLO4_27854 Corchorus olitorius HOM05D000634 ORTHO05D000517 2.9e-12 74.7 64 59.4
GSVIVG01012239001 Vitis vinifera HOM05D000634 ORTHO05D000517 3.7e-12 74.3 64 56.2
Duzib251G0159 Durio zibethinus HOM05D000634 ORTHO05D000517 4.9e-12 73.9 64 57.8
PGR102G1858 Punica granatum HOM05D000634 ORTHO05D000517 4.9e-12 73.9 65 56.9
Gohir.D02G130600 Gossypium hirsutum HOM05D000634 ORTHO05D000517 6.4e-12 73.6 64 56.2
QL03p073739 Quercus lobata HOM05D000634 ORTHO05D000517 8.3e-12 73.2 63 60.3
HanXRQChr08g0212521 Helianthus annuus HOM05D000634 ORTHO05D000517 2.4e-11 71.6 64 57.8
RcHm_v2.0_Chr4g0437951 Rosa chinensis HOM05D000634 ORTHO05D000517 4.1e-11 70.9 63 58.7
Carub.0001s2466 Capsella rubella HOM05D000634 ORTHO05D000517 5.4e-11 70.5 65 53.8
Cpa.g.sc1.152 Carica papaya HOM05D000634 ORTHO05D000517 5.4e-11 70.5 63 54.0
Eucgr.B03141 Eucalyptus grandis HOM05D000634 ORTHO05D000517 5.4e-11 70.5 64 57.8
THA.LOC104808516 Tarenaya hassleriana HOM05D000634 ORTHO05D000517 9.2e-11 69.7 64 50.0
ECA233G2971 Erigeron canadensis HOM05D000634 ORTHO05D000517 1.2e-10 69.3 64 53.1
AL1G39410 Arabidopsis lyrata HOM05D000634 ORTHO05D000517 1.6e-10 68.9 59 55.9
MSTRG.2301 Avicennia marina HOM05D000634 ORTHO05D000517 2.0e-10 68.6 64 53.1
FAN07G0390 Fragaria x ananassa HOM05D000634 ORTHO05D007695 2.0e-10 68.6 63 57.1
vmacro17043 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 2.0e-10 68.6 66 54.5
FvH4_4g29701 Fragaria vesca HOM05D000634 ORTHO05D000517 2.7e-10 68.2 64 56.2
Sopen05g006870 Solanum pennellii HOM05D000634 ORTHO05D000517 2.7e-10 68.2 64 57.8
FAN07G2511 Fragaria x ananassa HOM05D000634 ORTHO05D000517 3.5e-10 67.8 64 54.7
FAN12G1640 Fragaria x ananassa HOM05D006251 ORTHO05D007695 3.5e-10 67.8 63 55.6
Lj6A777T41 Lonicera japonica HOM05D000634 ORTHO05D000517 3.5e-10 67.8 66 53.0
A09p39810 Brassica napus HOM05D000634 ORTHO05D000517 6.0e-10 67.0 65 53.8
CANSAT64G0085 Cannabis sativa HOM05D000634 ORTHO05D000517 6.0e-10 67.0 66 57.6
MBI19_g06122_MAGBIO Magnolia biondii HOM05D000634 ORTHO05D000517 6.0e-10 67.0 64 53.1
Solyc05g012080.3 Solanum lycopersicum HOM05D000634 ORTHO05D000517 6.0e-10 67.0 64 56.2
Sp1g22350 Schrenkiella parvula HOM05D000634 ORTHO05D000517 7.8e-10 66.6 65 50.8
PGSC0003DMG400028310 Solanum tuberosum HOM05D000634 ORTHO05D000517 7.8e-10 66.6 64 56.2
BcaC05g26420 Brassica carinata HOM05D000634 ORTHO05D000517 1.0e-09 66.2 65 52.3
C05p24590 Brassica napus HOM05D000634 ORTHO05D000517 1.0e-09 66.2 65 52.3
BolC5t31195H Brassica oleracea HOM05D000634 ORTHO05D000517 1.0e-09 66.2 65 52.3
Sabra10G0119200 Salix brachista HOM05D000634 ORTHO05D000517 1.0e-09 66.2 64 54.7
BcaC05g26634 Brassica carinata HOM05D000634 ORTHO05D000517 1.3e-09 65.9 65 50.8
AT1G26340 Arabidopsis thaliana HOM05D000634 ORTHO05D000517 1.7e-09 65.5 59 52.5
BraA09t39481Z Brassica rapa HOM05D000634 ORTHO05D000517 3.0e-09 64.7 59 54.2
CAN.G707.22 Capsicum annuum HOM05D000634 ORTHO05D000517 3.0e-09 64.7 64 54.7
CARHR025580 Cardamine hirsuta HOM05D000634 ORTHO05D000517 3.0e-09 64.7 59 52.5
Nitab4.5_0007734g0010 Nicotiana tabacum HOM05D000634 ORTHO05D000517 3.9e-09 64.3 64 56.2
Nitab4.5_0000231g0040 Nicotiana tabacum HOM05D000634 ORTHO05D000517 5.0e-09 63.9 64 54.7
DCAR_030048 Daucus carota HOM05D000634 ORTHO05D000517 1.1e-08 62.8 58 50.0
Potri.010G156900 Populus trichocarpa HOM05D000634 ORTHO05D000517 1.5e-08 62.4 64 54.7
Peaxi162Scf00175g00523 Petunia axillaris HOM05D000634 ORTHO05D000517 1.9e-08 62.0 64 53.1
Sabra08G0073700 Salix brachista HOM05D000634 ORTHO05D000517 1.9e-08 62.0 64 53.1
Zm00001eb214730 Zea mays HOM05D000634 ORTHO05D000517 1.9e-08 62.0 65 46.2
Migut.E00045 Erythranthe guttata HOM05D000634 ORTHO05D000517 3.3e-08 61.2 64 48.4
Zm00001eb057570 Zea mays HOM05D000634 ORTHO05D000517 3.3e-08 61.2 64 48.4
FAN22G1444 Fragaria x ananassa HOM05D006251 ORTHO05D007695 4.3e-08 60.8 54 57.4
Lsat_1_v5_gn_8_45940 Lactuca sativa HOM05D000634 ORTHO05D000517 4.3e-08 60.8 63 52.4
Thhalv10009081m.g Eutrema salsugineum HOM05D000634 ORTHO05D000517 9.5e-08 59.7 59 49.2
FAN17G1351 Fragaria x ananassa HOM05D006251 ORTHO05D007695 1.6e-07 58.9 54 55.6
Oeu031532.1 Olea europaea HOM05D000634 ORTHO05D000517 1.6e-07 58.9 65 53.8
Aa31LG7G8710 Aethionema arabicum HOM05D000634 ORTHO05D000517 2.1e-07 58.5 68 42.6
TWI79G1333 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 3.6e-07 57.8 64 51.6
CSS0034130 Camellia sinensis var. sinensis HOM05D000634 ORTHO05D000517 1.4e-06 55.8 68 51.5
Aqoxy3G01563 Aquilegia oxysepala HOM05D000634 ORTHO05D000517 3.1e-06 54.7 64 43.8
Glyma.06G131900 Glycine max HOM05D000634 ORTHO05D000517 3.1e-06 54.7 64 46.9
Hund05828 Selenicereus undatus HOM05D000634 ORTHO05D000517 4.0e-06 54.3 65 47.7


User provided reference genes

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