Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 5.5e-147 524.6 336 100.0
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 6.5e-132 474.6 339 90.0
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.9e-99 366.7 360 70.0
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 6.6e-68 261.9 335 66.9
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.6e-68 261.9 335 66.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.7e-68 261.5 334 68.0
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.5e-67 260.8 333 67.0
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-66 257.3 336 67.3
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.1e-62 244.6 336 65.2
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.9e-54 217.2 344 59.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.9e-54 217.2 334 53.6
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 4.2e-54 216.1 355 58.9
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 7.9e-53 211.8 347 58.5
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.8e-52 210.7 353 58.4
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.0e-52 209.9 342 51.8
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 8.7e-52 208.4 342 59.6
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 3.3e-51 206.5 346 51.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 4.8e-50 202.6 339 59.6
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 8.1e-50 201.8 334 51.8
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.8e-49 200.7 350 54.9
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 9.0e-49 198.4 334 59.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.0e-48 197.2 340 51.8
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 4.5e-48 196.1 350 51.7
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-47 194.5 329 50.8
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.7e-47 194.1 342 43.9
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.7e-47 194.1 335 49.6
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-47 194.1 348 50.6
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-47 194.1 335 49.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.7e-47 194.1 341 55.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.8e-47 193.0 342 49.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 3.2e-46 189.9 334 51.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.2e-46 189.9 339 47.8
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 4.2e-46 189.5 341 54.5
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 5.5e-46 189.1 346 55.2
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.0e-45 185.7 329 55.0
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.3e-43 179.9 361 51.8
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-42 177.2 317 56.2
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 6.2e-42 175.6 335 52.5
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 4.0e-41 172.9 324 51.2
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.2e-40 171.4 308 50.3
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.3e-39 167.9 332 50.0
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 8.4e-39 165.2 347 47.3
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.5e-38 163.7 336 47.0
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 7.1e-38 162.2 319 51.4
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 7.1e-38 162.2 319 51.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 9.3e-38 161.8 306 48.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.2e-37 161.4 345 41.2
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.2e-37 161.4 328 47.0
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 4.6e-37 159.5 344 47.7
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.6e-37 159.5 323 47.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 6.7e-36 155.6 322 44.7
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 8.7e-36 155.2 342 37.7
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.5e-35 153.7 382 44.8
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 3.3e-35 153.3 334 46.4
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.7e-35 152.5 316 47.2
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 7.4e-35 152.1 346 37.3
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 7.4e-35 152.1 335 49.3
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.3e-34 151.4 334 35.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-34 151.4 347 51.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-34 151.4 347 51.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.3e-34 151.4 347 51.0
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.2e-34 150.6 343 38.8
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.4e-33 147.1 336 45.2
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 4.1e-33 146.4 347 36.6
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 5.3e-33 146.0 366 44.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.3e-33 146.0 333 35.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 5.3e-33 146.0 327 46.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 9.0e-33 145.2 365 42.7
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.2e-32 144.8 322 46.3
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.5e-32 142.9 315 42.9
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.3e-31 141.4 350 49.1
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 2.2e-31 140.6 345 49.3
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.8e-31 139.8 317 44.2
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 5.0e-31 139.4 347 45.0
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 6.5e-31 139.0 350 49.1
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-30 137.9 303 45.9
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-30 137.9 341 37.2
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.9e-30 137.5 342 35.4
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.9e-30 137.5 345 49.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 4.2e-30 136.3 341 48.4
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.2e-30 135.6 323 46.1
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.1e-29 134.0 340 48.5
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 3.6e-29 133.3 339 34.2
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.0e-28 131.7 278 39.2
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.4e-28 131.3 330 40.9
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.8e-28 131.0 309 39.2
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.8e-28 131.0 309 39.2
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.8e-28 131.0 329 49.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 2.3e-28 130.6 345 45.8
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-28 130.6 339 35.7
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 3.0e-28 130.2 348 45.4
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.0e-28 130.2 370 41.1
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 6.7e-28 129.0 327 41.6
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 8.8e-28 128.6 347 45.2
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 8.8e-28 128.6 345 47.0
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.5e-27 127.9 348 46.3
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.5e-27 127.9 345 45.5
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.5e-27 127.9 345 45.5
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.5e-27 127.9 305 40.0
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.5e-27 127.1 334 41.6
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.3e-27 126.7 347 45.0
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 7.4e-27 125.6 314 44.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 9.7e-27 125.2 350 46.0
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.7e-26 124.4 340 39.7
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 6.3e-26 122.5 339 46.3
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.4e-25 120.6 343 32.7
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.4e-25 120.6 346 40.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 6.9e-25 119.0 327 38.8
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 6.9e-25 119.0 118 61.9
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 9.1e-25 118.6 344 36.0
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 9.1e-25 118.6 327 36.4
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.6e-24 117.1 310 48.1
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.5e-24 116.3 319 43.3
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.5e-24 116.3 340 45.6
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 7.7e-24 115.5 328 39.0
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.0e-23 115.2 289 37.7
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.7e-23 114.4 329 32.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 8.5e-23 112.1 344 40.4
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.9e-22 110.9 337 43.0
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.5e-22 110.5 396 42.9
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.2e-22 110.2 237 51.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 4.2e-22 109.8 345 34.2
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.5e-22 109.4 320 43.4
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.7e-21 107.1 216 50.5
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 3.6e-21 106.7 325 33.8
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.8e-20 104.4 341 37.0
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.8e-20 104.4 308 46.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.9e-20 103.2 293 33.8
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.9e-20 103.2 335 33.7
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.1e-19 101.7 345 43.5
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.5e-19 101.3 165 44.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 4.8e-18 96.3 256 52.7
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.4e-17 94.0 303 48.5
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.4e-17 94.0 324 32.7
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 5.3e-17 92.8 316 32.9
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 4.5e-16 89.7 335 35.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.0e-15 88.6 333 32.4
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 8.5e-15 85.5 332 43.7
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.1e-14 85.1 324 32.1
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.1e-14 85.1 332 34.0
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.2e-13 81.6 322 41.9
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.0e-12 77.0 272 41.5
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 5.2e-12 76.3 274 41.2
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.1e-09 67.0 340 30.6
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 7.0e-09 65.9 335 39.4
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 3.8e-07 60.1 336 26.2
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 6.5e-07 59.3 61 57.4


User provided reference genes

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