Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 0.0e+00 1444.9 803 100.0
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 0.0e+00 1290.8 833 87.4
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.1e-293 1012.3 857 70.8
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 7.2e-246 854.4 822 61.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 1.4e-244 850.1 824 61.4
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 6.6e-231 804.7 849 60.8
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.0e-227 793.1 861 58.7
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.7e-226 790.0 852 58.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 1.7e-226 790.0 834 58.6
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.7e-226 788.9 844 61.1
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 4.1e-225 785.4 835 58.7
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.0e-220 770.8 825 57.0
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.8e-220 768.1 819 57.9
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 9.8e-219 764.2 820 57.8
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 5.4e-217 758.4 825 56.2
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 7.0e-217 758.1 832 58.4
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.2e-216 757.3 821 57.7
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 3.0e-215 752.7 825 59.9
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 7.1e-209 731.5 813 54.7
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.2e-208 730.7 834 55.2
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.3e-207 726.5 824 58.5
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 5.6e-206 721.8 872 53.4
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.5e-203 713.8 808 56.6
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.8e-203 711.8 828 57.4
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.2e-200 704.1 817 54.6
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.5e-200 702.6 822 54.6
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.1e-198 697.6 820 56.2
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 7.6e-195 684.9 823 52.9
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 9.9e-195 684.5 803 56.2
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 3.8e-194 682.6 839 52.6
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 9.3e-193 677.9 819 54.0
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.2e-192 677.6 819 53.7
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 3.9e-191 672.5 833 54.5
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.4e-188 663.3 818 52.9
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 4.0e-188 662.5 814 53.1
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 4.5e-187 659.1 824 54.9
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 9.9e-187 657.9 817 50.8
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 4.9e-186 655.6 792 54.4
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.1e-185 654.4 839 51.5
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.9e-185 653.7 811 52.8
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 3.5e-184 649.4 797 52.8
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 8.7e-183 644.8 803 53.5
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.1e-182 644.4 810 51.2
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 5.6e-182 642.1 823 52.2
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 2.8e-181 639.8 811 51.0
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 3.7e-181 639.4 793 52.1
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 8.1e-181 638.3 794 53.4
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.4e-180 636.7 808 51.0
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 9.0e-180 634.8 814 52.0
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 3.4e-179 632.9 844 50.7
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 8.4e-178 628.2 808 50.2
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.1e-177 627.9 821 51.8
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.4e-177 627.5 794 52.8
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 3.2e-177 626.3 775 52.0
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.6e-176 624.0 843 50.4
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 7.9e-176 621.7 795 53.1
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.8e-175 620.5 952 44.0
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 3.9e-175 619.4 817 50.3
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 5.1e-175 619.0 820 48.5
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.1e-175 619.0 834 47.6
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 8.7e-175 618.2 820 50.5
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.1e-174 617.8 851 48.2
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.5e-174 616.7 808 50.7
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 4.3e-174 615.9 787 50.7
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 4.3e-174 615.9 820 51.1
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 3.7e-173 612.8 796 53.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 4.8e-173 612.5 810 50.0
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 4.0e-172 609.4 793 52.8
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 5.3e-172 609.0 840 49.0
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 9.0e-172 608.2 819 48.2
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 9.0e-172 608.2 855 48.0
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 4.5e-171 605.9 849 47.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 2.2e-170 603.6 817 50.1
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.1e-169 601.3 819 49.0
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 8.7e-167 591.7 832 48.6
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.1e-166 591.3 868 46.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.5e-166 590.9 814 51.5
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 1.9e-166 590.5 832 49.3
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 5.7e-166 589.0 832 47.5
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 1.3e-165 587.8 809 48.8
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 6.3e-165 585.5 824 50.4
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 3.4e-163 579.7 831 48.0
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 1.0e-162 578.2 822 47.9
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.5e-162 575.1 819 45.9
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 3.2e-161 573.2 811 44.5
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.5e-161 572.4 730 51.4
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.6e-160 570.9 827 49.9
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 4.3e-158 562.8 816 50.5
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 5.7e-158 562.4 905 46.0
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.6e-147 526.9 807 43.9
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 3.2e-145 520.0 818 44.9
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 5.2e-143 512.7 816 43.6
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 5.0e-130 469.5 792 44.1
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 9.4e-129 465.3 614 54.2
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.4e-127 461.5 757 42.0
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 8.9e-119 432.2 813 39.2
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-111 408.3 576 48.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 8.9e-103 379.0 544 48.9
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 9.2e-100 369.0 322 58.7
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 2.0e-99 367.9 828 35.6
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 3.5e-99 367.1 833 36.3
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.3e-95 354.4 519 50.1
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 6.2e-80 303.1 273 60.1
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 7.6e-70 269.6 319 53.9
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.2e-68 263.8 494 39.1
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.8e-64 251.1 491 40.1
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.5e-62 245.4 323 51.7
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 6.4e-61 240.0 791 31.9
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 5.5e-60 236.9 311 52.7
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 5.6e-57 226.9 359 46.2
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.2e-51 209.1 471 35.5
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.5e-51 207.6 407 42.5
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.7e-50 203.0 299 50.8
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 3.4e-46 191.0 274 47.8
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.4e-42 179.1 145 60.0
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.7e-40 171.0 190 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 4.7e-35 154.1 368 37.0
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 6.5e-29 133.7 109 63.3
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.0e-27 126.7 128 55.5
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.2e-26 124.0 131 52.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 2.6e-25 121.7 119 58.0
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.7e-25 119.8 103 64.1
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.7e-24 119.0 131 57.3
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 3.7e-24 117.9 110 60.0
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.4e-23 115.9 636 28.3
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.1e-23 114.8 134 53.7
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 2.9e-21 108.2 151 41.1
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 6.5e-21 107.1 689 24.5
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 8.5e-21 106.7 247 36.8
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 3.2e-20 104.8 351 35.6
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.2e-17 96.3 147 35.4
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 7.5e-17 93.6 146 45.2
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.2e-14 86.3 82 53.7
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.2e-14 86.3 69 68.1
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.0e-14 85.5 83 59.0
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 6.5e-13 80.5 675 23.0
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.1e-12 79.7 572 23.3
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.9e-12 79.0 57 70.2
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.5e-12 77.4 69 62.3
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.1e-11 75.5 110 50.0
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.7e-11 75.1 69 62.3
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.4e-09 68.2 48 68.8
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-06 59.7 51 60.8


User provided reference genes

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