Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 7.4e-242 840.1 420 100.0
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 5.7e-218 760.8 402 93.5
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 4.0e-187 658.3 422 76.8
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 3.4e-186 655.2 404 78.5
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 4.4e-186 654.8 439 74.9
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.2e-185 652.5 440 75.0
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 2.4e-184 649.0 421 76.2
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 1.3e-182 643.3 422 74.6
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 2.5e-181 639.0 417 74.6
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 3.3e-181 638.6 419 74.5
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 3.3e-181 638.6 422 75.6
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 1.2e-180 636.7 424 74.5
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 3.6e-180 635.2 419 72.3
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 4.0e-179 631.7 422 74.6
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 9.8e-178 627.1 422 74.6
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 1.7e-177 626.3 423 73.3
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 8.3e-177 624.0 404 75.0
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 1.1e-176 623.6 420 73.1
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 1.4e-176 623.2 414 73.7
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 3.2e-176 622.1 415 73.7
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 1.2e-175 620.2 417 73.9
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 5.9e-175 617.8 417 71.0
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 6.6e-174 614.4 403 75.2
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 4.3e-173 611.7 414 72.7
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 9.5e-173 610.5 424 72.6
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 6.2e-172 607.8 412 71.4
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 1.4e-171 606.7 416 70.9
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 5.2e-171 604.7 407 72.7
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 1.5e-170 603.2 412 71.4
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 3.4e-170 602.1 421 69.4
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 4.4e-170 601.7 421 70.5
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 4.4e-170 601.7 416 68.8
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 1.3e-169 600.1 405 70.4
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 2.2e-169 599.4 421 68.9
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 3.7e-169 598.6 417 67.6
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 4.9e-169 598.2 423 69.7
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 4.9e-169 598.2 420 70.2
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 2.4e-168 595.9 414 71.7
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.4e-168 595.9 405 70.6
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 1.2e-167 593.6 417 68.3
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.6e-167 593.2 418 68.4
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 1.6e-167 593.2 439 69.9
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 1.7e-166 589.7 420 71.0
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 3.9e-166 588.6 419 71.1
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 1.1e-165 587.0 416 69.2
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 2.5e-165 585.9 408 70.3
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 5.6e-165 584.7 417 67.4
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 9.5e-165 583.9 421 69.4
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 3.6e-164 582.0 406 69.5
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 1.8e-163 579.7 422 67.5
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 4.0e-163 578.6 408 67.9
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 6.8e-163 577.8 406 69.0
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 8.9e-163 577.4 420 67.6
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 2.0e-162 576.2 422 68.0
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 3.4e-162 575.5 422 67.3
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 4.4e-162 575.1 412 67.0
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 5.8e-162 574.7 410 67.6
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 8.3e-161 570.9 409 67.7
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 1.1e-160 570.5 424 66.7
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 5.4e-160 568.2 404 69.8
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 9.2e-160 567.4 421 67.5
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.6e-159 566.6 421 67.5
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 3.9e-158 562.0 406 69.7
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 6.2e-156 554.7 412 66.3
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 3.8e-153 545.4 410 65.9
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 6.6e-150 534.6 407 65.4
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 1.1e-147 527.3 406 65.0
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 1.4e-147 526.9 329 79.0
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 1.2e-146 523.9 406 63.8
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.5e-146 523.5 410 62.0
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 1.1e-144 517.3 409 60.6
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 3.2e-136 489.2 404 57.7
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 6.0e-127 458.4 319 69.9
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 2.3e-126 456.4 299 76.6
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 7.4e-125 451.4 286 73.1
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 1.1e-112 411.0 344 59.3
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.1e-112 411.0 402 51.5
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 3.2e-112 409.5 420 51.2
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.1e-111 406.8 422 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 4.8e-108 395.6 406 49.5
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 5.3e-107 392.1 426 47.4
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 7.7e-106 388.3 391 50.4
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 2.3e-102 376.7 313 60.4
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.0e-101 373.6 436 44.5
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.9e-96 357.1 446 43.3
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.0e-94 349.7 458 40.2
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 1.5e-88 330.9 262 64.9
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 1.5e-69 267.7 295 49.8
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 3.7e-68 263.1 149 77.2
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 8.3e-68 261.9 141 84.4
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 2.5e-64 250.4 141 79.4
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 5.6e-64 249.2 250 54.8
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.1e-63 247.3 256 54.3
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 2.1e-63 247.3 145 78.6
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 5.8e-61 239.2 166 59.6
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 1.7e-60 237.7 265 50.9
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 7.8e-58 228.8 267 48.7
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 2.4e-51 207.2 199 56.8
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 1.5e-45 188.0 132 70.5
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 4.4e-37 159.8 107 72.9
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 3.8e-36 156.8 138 58.0
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 5.4e-35 152.9 144 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 3.3e-32 143.7 122 55.7
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 3.1e-22 110.5 161 37.9
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 2.6e-21 107.5 94 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 4.5e-21 106.7 226 31.9
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 2.9e-20 104.0 50 84.0
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 6.4e-20 102.8 103 55.3
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 3.2e-19 100.5 57 78.9
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.2e-18 98.6 103 45.6
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.0e-17 95.5 109 41.3
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.1e-16 92.0 109 41.3
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 9.6e-16 89.0 138 40.6
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.6e-15 88.2 109 40.4
CAN.G992.5 Capsicum annuum HOM05D006847 ORTHO05D008685 6.2e-15 86.3 210 33.8
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 5.3e-14 83.2 51 72.5
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 2.7e-10 70.9 168 29.8
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 3.9e-09 67.0 168 29.8
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 3.9e-09 67.0 162 27.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 3.9e-09 67.0 168 28.6
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 5.1e-09 66.6 168 29.2
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 5.1e-09 66.6 175 28.6
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 6.7e-09 66.2 168 28.0
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 8.7e-09 65.9 168 28.0
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 8.7e-09 65.9 168 28.6
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 1.1e-08 65.5 168 27.4
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 1.1e-08 65.5 168 27.4
CBR_g22374 Chara braunii HOM05D016606 ORTHO05D018318 1.5e-08 65.1 207 28.5
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 26.8
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 2.5e-08 64.3 168 26.8
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 2.5e-08 64.3 168 26.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.5e-08 64.3 168 26.8
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 3.3e-08 63.9 191 27.2
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 3.3e-08 63.9 168 27.4
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 4.3e-08 63.5 168 26.2
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 25.6
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 26.2
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 25.6
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 28.0
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 26.8
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 7.4e-08 62.8 168 26.8
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 9.6e-08 62.4 168 28.0
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 9.6e-08 62.4 168 26.2
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.3e-07 62.0 168 26.8
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.3e-07 62.0 168 25.6
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 1.6e-07 61.6 180 28.9
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 1.6e-07 61.6 168 27.4
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.6e-07 61.6 169 29.6
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.6e-07 61.6 168 27.4
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 1.6e-07 61.6 168 28.6
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 1.6e-07 61.6 168 27.4
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 2.1e-07 61.2 168 27.4
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.8e-07 60.8 168 26.2
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 2.8e-07 60.8 168 26.8
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 3.7e-07 60.5 168 26.2
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 3.7e-07 60.5 168 25.6
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 3.7e-07 60.5 168 26.8
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 4.8e-07 60.1 168 25.6
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 4.8e-07 60.1 168 25.6
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 4.8e-07 60.1 169 27.2
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 4.8e-07 60.1 168 25.6
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 6.2e-07 59.7 168 25.0
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 6.2e-07 59.7 168 26.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 8.2e-07 59.3 168 26.2
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 8.2e-07 59.3 168 26.8
Pp3c6_26630 Physcomitrium patens HOM05D016606 ORTHO05D018318 8.2e-07 59.3 159 27.7
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.1e-06 58.9 166 27.1
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.1e-06 58.9 168 26.2
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.1e-06 58.9 168 26.2
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 1.1e-06 58.9 168 26.2
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 1.1e-06 58.9 168 26.8
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.1e-06 58.9 192 24.5
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 1.4e-06 58.5 168 25.6
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 1.8e-06 58.2 168 26.2
SMO334G0059 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.4e-06 57.8 64 43.8
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 3.1e-06 57.4 187 25.7
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 3.1e-06 57.4 168 27.4
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 6.9e-06 56.2 168 25.6


User provided reference genes

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