Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.1e-154 550.1 296 100.0
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 4.6e-97 358.6 258 79.1
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 6.9e-85 318.2 264 69.7
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.1e-62 243.4 274 55.5
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.1e-62 243.4 251 55.0
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.8e-61 240.4 269 55.4
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.7e-59 233.8 258 54.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.8e-59 232.6 256 53.1
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 8.5e-59 231.5 259 56.8
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 8.5e-59 231.5 269 55.0
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.1e-58 231.1 300 52.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.5e-58 229.9 260 56.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.5e-58 229.9 260 56.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.2e-58 229.6 258 54.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.2e-58 228.4 302 51.3
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.2e-58 228.4 302 51.3
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 9.3e-58 228.0 275 53.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 5.7e-55 218.8 262 54.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 7.4e-55 218.4 267 54.3
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 6.3e-54 215.3 252 53.6
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 4.1e-53 212.6 265 53.2
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 6.9e-53 211.8 271 52.0
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 6.9e-53 211.8 258 53.9
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 4.5e-52 209.1 285 50.9
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.4e-50 204.1 273 50.2
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.2e-49 201.1 238 54.6
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.6e-49 200.7 285 49.1
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.6e-49 199.5 303 52.5
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.6e-49 199.5 273 52.0
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.4e-48 197.6 267 51.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.3e-48 196.8 273 46.5
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 3.9e-48 196.1 264 47.7
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.9e-48 196.1 274 48.2
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 8.8e-48 194.9 261 52.5
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.0e-47 193.7 260 49.6
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.4e-45 187.6 269 51.7
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 3.1e-45 186.4 244 46.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 9.1e-45 184.9 224 52.2
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.4e-44 183.0 244 50.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 4.5e-44 182.6 276 48.6
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 5.9e-44 182.2 246 50.4
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 2.2e-43 180.3 258 50.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 5.0e-43 179.1 266 50.4
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.4e-42 177.6 265 52.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 4.2e-42 176.0 267 47.6
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 9.4e-42 174.9 257 47.9
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 9.4e-42 174.9 256 46.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.2e-41 174.5 260 49.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.1e-41 173.7 290 46.9
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.1e-41 172.2 254 47.6
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 7.9e-41 171.8 248 46.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.0e-40 169.9 235 48.9
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 8.8e-40 168.3 242 47.9
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-39 167.9 254 47.2
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.6e-39 166.8 256 48.4
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.4e-39 165.2 261 46.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 9.7e-39 164.9 248 45.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.1e-37 161.4 265 45.7
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.1e-37 159.5 269 44.2
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 7.7e-36 155.2 258 41.5
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.7e-35 154.1 264 42.4
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.2e-35 153.7 214 49.5
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.2e-35 153.7 238 50.4
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 5.0e-35 152.5 272 47.8
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.0e-35 152.5 259 47.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.0e-35 152.5 212 46.2
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 6.5e-35 152.1 233 46.8
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 6.5e-35 152.1 206 49.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.5e-34 151.0 243 45.3
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.9e-34 150.6 257 40.9
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 3.2e-34 149.8 210 47.6
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.1e-33 147.1 261 41.8
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 8.0e-33 145.2 261 42.5
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 8.0e-33 145.2 233 48.5
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.8e-32 144.1 205 47.8
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.0e-31 140.6 222 46.4
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.6e-31 140.2 207 45.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.3e-30 137.9 216 43.1
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.2e-30 137.1 216 42.6
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.8e-30 136.7 265 43.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 6.3e-30 135.6 211 44.5
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.1e-29 134.8 218 46.3
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 7.0e-29 132.1 221 41.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.2e-28 131.3 217 43.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.6e-28 131.0 234 43.6
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.0e-28 130.6 216 41.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-28 130.6 217 41.9
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.0e-28 130.6 220 41.4
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.0e-27 128.3 221 43.4
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.7e-27 127.5 222 41.9
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 2.2e-27 127.1 216 40.7
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.2e-27 127.1 216 40.7
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.2e-27 127.1 216 40.7
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.9e-26 124.0 214 39.3
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.2e-26 123.2 104 68.3
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.2e-26 122.9 216 40.3
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 5.5e-26 122.5 226 46.5
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.2e-25 121.3 223 42.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.6e-25 120.9 113 62.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.7e-25 120.2 215 40.9
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 2.7e-25 120.2 204 42.2
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 8.0e-25 118.6 197 41.6
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 8.0e-25 118.6 197 41.6
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.8e-24 115.5 219 42.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.4e-23 112.8 215 38.6
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 9.8e-23 111.7 98 62.2
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 9.8e-23 111.7 96 60.4
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.2e-22 110.5 121 52.9
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.2e-22 110.5 262 43.1
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.8e-22 110.2 135 50.4
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.7e-22 109.8 170 48.8
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.7e-22 109.8 111 57.7
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.3e-22 109.0 134 49.3
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 6.3e-22 109.0 258 38.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.1e-21 108.2 231 44.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-21 108.2 121 52.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.8e-21 107.5 169 49.1
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.1e-21 106.7 105 58.1
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.1e-21 106.7 209 40.2
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 5.4e-21 105.9 210 39.5
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.5e-20 102.8 206 51.0
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.9e-20 102.4 140 45.7
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 7.7e-20 102.1 270 38.9
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 7.7e-20 102.1 222 36.9
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-19 101.7 222 37.8
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 2.3e-19 100.5 210 40.5
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.9e-19 100.1 111 55.9
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.9e-19 100.1 111 55.9
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.9e-19 100.1 152 44.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 6.5e-19 99.0 144 47.2
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 6.5e-19 99.0 144 47.2
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 1.5e-18 97.8 213 39.9
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.6e-17 93.2 219 38.4
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 6.8e-16 89.0 215 40.5
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 8.8e-16 88.6 197 40.1
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 8.8e-16 88.6 46 87.0
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 7.5e-15 85.5 82 61.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 9.8e-15 85.1 51 76.5
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.1e-13 81.6 178 38.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.4e-13 79.3 194 37.6
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-12 78.2 77 59.7
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.3e-11 73.9 65 60.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.9e-11 73.6 47 72.3
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.9e-11 73.6 47 72.3
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 5.0e-11 72.8 66 57.6
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 9.5e-10 68.6 199 36.2
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.2e-09 68.2 62 56.5
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-09 67.0 57 56.1
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.6e-09 66.6 190 34.2
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.2e-07 61.6 133 36.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 2.0e-07 60.8 233 32.2
ECA233G2451 Erigeron canadensis HOM05D001250 ORTHO05D000627 2.0e-07 60.8 105 38.1
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.4e-07 60.1 117 40.2
DCAR_019771 Daucus carota HOM05D000333 ORTHO05D000190 4.4e-07 59.7 117 30.8
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.7e-06 57.8 171 33.3
BolC9t53427H Brassica oleracea HOM05D000333 ORTHO05D000190 2.2e-06 57.4 79 41.8
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.2e-06 57.4 60 45.0
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 3.7e-06 56.6 173 34.1
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 4.9e-06 56.2 87 44.8
Migut.O00779 Erythranthe guttata HOM05D001250 ORTHO05D000627 4.9e-06 56.2 127 33.9
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 6.4e-06 55.8 224 33.5
C07p39490 Brassica napus HOM05D000333 ORTHO05D000190 6.4e-06 55.8 67 44.8
BcaC06g30748 Brassica carinata HOM05D000333 ORTHO05D000190 8.3e-06 55.5 67 44.8
BolC7t44468H Brassica oleracea HOM05D000333 ORTHO05D000190 8.3e-06 55.5 67 44.8
ClCG05G022560 Citrullus lanatus HOM05D001250 ORTHO05D000627 8.3e-06 55.5 120 36.7
CsaV3_5G034460 Cucumis sativus L. HOM05D001250 ORTHO05D000627 8.3e-06 55.5 144 34.0
Manes.01G111600 Manihot esculenta HOM05D001250 ORTHO05D000627 8.3e-06 55.5 108 35.2
Oeu002666.1 Olea europaea HOM05D000333 ORTHO05D000190 8.3e-06 55.5 72 41.7
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 8.3e-06 55.5 59 45.8


User provided reference genes

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