Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.1e-198 696.4 359 100.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 5.2e-180 634.4 359 91.9
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 7.6e-171 604.0 359 87.2
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.5e-152 542.0 361 82.0
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.8e-151 539.7 359 82.2
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.9e-151 538.5 359 81.3
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.9e-151 538.5 359 81.3
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.9e-151 538.5 359 81.3
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.5e-147 525.0 359 79.9
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.7e-146 523.1 359 79.7
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.8e-135 486.5 372 69.4
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 6.7e-135 484.6 368 71.2
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.7e-133 479.9 367 71.4
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 2.2e-133 479.6 368 70.9
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.7e-133 478.8 368 71.5
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 6.3e-133 478.0 365 71.5
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 2.4e-132 476.1 367 71.1
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 5.3e-132 474.9 337 75.1
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.2e-131 473.8 369 71.5
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.2e-131 473.8 365 71.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.5e-131 473.4 320 77.8
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 2.0e-131 473.0 365 71.5
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.6e-131 472.6 368 70.7
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.3e-130 470.3 314 77.4
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 3.8e-130 468.8 318 78.3
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 3.8e-130 468.8 367 70.8
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.5e-130 467.6 350 71.1
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.1e-129 467.2 350 71.4
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.4e-129 466.8 368 69.8
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.9e-129 466.5 318 77.7
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.9e-129 466.5 368 72.0
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.5e-129 466.1 306 78.1
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.6e-128 463.4 362 71.5
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.6e-128 463.4 369 69.6
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 2.1e-128 463.0 367 71.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 6.1e-128 461.5 363 68.9
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 8.0e-128 461.1 342 72.2
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 8.0e-128 461.1 342 72.2
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 8.0e-128 461.1 333 72.7
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.0e-127 460.7 370 69.2
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.0e-127 460.7 368 69.6
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.0e-127 460.7 354 71.5
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.4e-127 460.3 364 70.9
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.3e-127 459.5 370 67.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.3e-127 459.5 336 73.2
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.0e-127 459.1 367 67.6
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 5.2e-127 458.4 335 74.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 6.7e-127 458.0 357 67.8
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 8.8e-127 457.6 367 71.4
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 2.0e-126 456.4 348 71.8
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 3.3e-126 455.7 317 74.1
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 1.3e-125 453.8 311 75.6
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.3e-125 453.8 309 75.7
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.7e-125 453.4 314 76.4
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.4e-124 450.3 339 72.3
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 5.3e-124 448.4 305 75.1
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 5.3e-124 448.4 360 68.3
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 7.0e-124 448.0 350 68.9
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 9.1e-124 447.6 362 67.4
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 9.1e-124 447.6 370 67.8
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.2e-123 447.2 304 77.3
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.2e-123 447.2 274 83.2
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.6e-123 446.8 369 69.4
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-123 446.4 360 68.9
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.0e-123 446.4 365 67.1
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.6e-123 446.0 314 76.1
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.6e-123 446.0 312 76.3
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 2.6e-123 446.0 367 65.9
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.6e-123 446.0 377 67.1
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 3.5e-123 445.7 306 77.1
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 3.5e-123 445.7 299 76.9
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.5e-123 445.3 360 68.9
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 4.5e-123 445.3 274 83.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.9e-123 444.9 370 67.0
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 5.9e-123 444.9 367 66.2
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.0e-122 444.1 274 81.8
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.0e-122 444.1 366 67.2
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.0e-122 444.1 369 66.1
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.3e-122 443.7 274 82.8
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.7e-122 443.4 299 76.3
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-122 443.4 311 74.9
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 361 68.7
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.9e-122 442.6 359 66.0
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 2.9e-122 442.6 320 73.1
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.8e-122 442.2 274 82.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 5.0e-122 441.8 275 81.5
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.0e-122 441.8 299 76.6
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 6.5e-122 441.4 369 66.4
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 8.5e-122 441.0 361 67.9
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 8.5e-122 441.0 326 73.9
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 8.5e-122 441.0 323 70.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.5e-121 440.3 360 67.2
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.5e-121 440.3 361 68.4
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.5e-121 440.3 301 74.8
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.9e-121 439.9 311 74.0
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.9e-121 439.9 300 75.7
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 2.5e-121 439.5 349 67.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.2e-121 439.1 300 75.7
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.2e-121 438.7 311 74.3
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 7.2e-121 438.0 337 69.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 9.4e-121 437.6 363 66.4
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.6e-120 436.8 363 66.4
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.6e-120 436.8 367 65.4
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.7e-120 436.0 255 83.5
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 2.7e-120 436.0 367 66.8
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 3.6e-120 435.6 402 60.2
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 3.6e-120 435.6 402 60.2
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 4.7e-120 435.3 320 72.8
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 8.0e-120 434.5 288 77.8
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 3.0e-119 432.6 366 63.4
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 5.2e-119 431.8 324 68.8
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.2e-118 430.6 367 67.8
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.6e-118 429.5 256 83.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 2.6e-118 429.5 359 67.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 2.8e-117 426.0 254 81.9
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 3.7e-117 425.6 238 90.3
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 3.7e-117 425.6 253 85.0
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.1e-116 422.5 335 69.0
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.1e-113 414.1 360 63.1
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 9.4e-113 411.0 281 75.1
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-110 404.1 391 59.1
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.6e-110 402.9 335 66.9
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 5.7e-110 401.7 339 65.2
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 4.8e-109 398.7 314 67.2
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.4e-108 396.4 338 63.3
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 5.4e-108 395.2 362 64.4
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.6e-107 393.7 281 74.4
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 2.7e-107 392.9 325 64.9
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.0e-106 391.0 301 67.1
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.0e-106 391.0 249 77.5
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.9e-106 389.4 267 75.3
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 2.5e-105 386.3 225 84.9
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.3e-103 379.8 264 73.1
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 4.0e-103 379.0 288 67.7
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.8e-101 372.9 243 76.1
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.0e-95 354.4 257 66.1
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 4.9e-93 345.5 242 71.9
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 9.2e-92 341.3 309 61.8
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 6.6e-90 335.1 301 61.5
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 3.6e-88 329.3 285 60.4
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 9.8e-86 321.2 341 58.4
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 2.6e-62 243.4 196 65.8
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-60 238.0 156 76.9
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 5.4e-60 235.7 157 75.8
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 3.6e-56 223.0 145 73.1
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 3.6e-56 223.0 145 73.1
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.3e-48 198.0 108 96.3
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.9e-36 157.5 104 76.9
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.2e-36 156.4 99 79.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.9e-35 152.1 173 53.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 2.5e-33 147.1 131 60.3
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 5.7e-25 119.4 102 65.7
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 3.2e-20 103.6 64 85.9
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.2e-20 103.2 61 85.2


User provided reference genes

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