Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 7.2e-127 457.2 225 100.0
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 7.7e-121 437.2 225 96.0
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 9.1e-114 413.7 225 92.0
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.5e-113 411.8 225 87.6
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 4.5e-113 411.4 225 87.6
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.5e-111 404.4 225 86.7
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.5e-111 404.4 225 86.7
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 7.2e-111 404.1 225 86.2
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-110 403.3 225 85.8
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.1e-110 402.5 225 86.2
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.6e-108 395.6 225 84.4
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 3.7e-107 391.7 225 83.6
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.7e-107 391.7 225 83.6
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 4.9e-107 391.3 225 83.1
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 6.3e-107 391.0 225 82.2
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 6.3e-107 391.0 225 82.2
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 6.3e-107 391.0 225 85.3
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 4.1e-106 388.3 225 83.1
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 7.0e-106 387.5 225 84.0
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 9.1e-106 387.1 225 80.9
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 9.1e-106 387.1 225 84.0
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 3.5e-105 385.2 225 81.8
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 3.5e-105 385.2 225 79.1
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 83.1
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 79.1
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.3e-104 383.3 225 83.1
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.3e-104 383.3 225 78.7
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 1.7e-104 382.9 225 83.6
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.5e-103 379.8 223 82.5
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.5e-103 379.8 223 79.4
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.5e-103 379.0 225 80.4
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.2e-103 378.3 225 78.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 9.5e-103 377.1 225 82.2
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 81.8
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 78.7
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 2.1e-102 375.9 225 81.3
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 3.6e-102 375.2 225 78.7
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 4.7e-102 374.8 224 80.4
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.8e-101 372.9 225 80.0
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.0e-101 371.7 226 79.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.0e-101 371.7 226 79.6
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 4.0e-101 371.7 225 80.0
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 4.0e-101 371.7 226 80.1
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 8.9e-101 370.5 225 79.1
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.5e-100 369.8 224 79.9
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 2.0e-100 369.4 279 67.7
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 3.4e-100 368.6 225 79.1
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 80.4
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 5.7e-100 367.9 225 80.4
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.5e-100 367.5 225 80.0
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 79.6
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 80.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 79.1
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 8.3e-99 364.0 225 78.2
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 76.9
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 5.4e-98 361.3 226 75.7
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 7.0e-98 360.9 225 75.6
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.3e-96 356.7 260 69.6
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 3.9e-96 355.1 225 76.9
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 6.6e-96 354.4 225 74.7
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 8.6e-96 354.0 225 76.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.1e-95 353.6 225 73.3
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 75.1
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 75.1
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 4.3e-95 351.7 197 85.3
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 74.2
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 5.6e-95 351.3 197 86.3
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 5.6e-95 351.3 225 74.7
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 5.6e-95 351.3 225 74.2
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 7.3e-95 350.9 225 75.6
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 9.5e-95 350.5 226 73.9
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.2e-94 350.1 225 76.4
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 6.2e-94 347.8 225 75.1
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 8.0e-94 347.4 228 75.4
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 74.2
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 75.1
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 5.2e-93 344.7 227 74.9
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 6.8e-93 344.4 266 65.4
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 8.9e-93 344.0 225 73.8
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 74.7
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 73.3
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 73.8
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.5e-92 343.2 208 79.3
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 73.3
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 2.0e-92 342.8 226 74.3
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 73.3
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 73.3
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 73.3
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 72.9
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 9.8e-92 340.5 232 71.1
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 70.7
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 75.6
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.2e-89 333.6 225 69.3
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.0e-89 332.8 228 72.4
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 72.9
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 8.6e-88 327.4 227 69.6
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.5e-87 326.6 227 70.0
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 69.8
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 5.6e-87 324.7 225 69.8
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 6.2e-86 321.2 225 69.3
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 6.2e-86 321.2 225 72.9
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.1e-85 320.5 225 68.9
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 70.7
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 5.4e-82 308.1 217 68.7
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.0e-80 303.9 177 83.6
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 5.1e-80 301.6 225 68.4
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.8e-77 293.1 228 64.5
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.5e-76 290.0 228 64.5
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 7.6e-76 287.7 225 61.8
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.4e-74 282.7 225 67.1
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 4.1e-74 282.0 174 78.7
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.6e-73 278.5 225 64.9
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.3e-72 276.2 254 58.7
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.3e-72 276.2 254 58.7
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 8.6e-72 274.2 210 65.7
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 2.5e-71 272.7 226 61.5
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.1e-69 267.3 245 57.1
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 1.4e-66 256.9 229 61.1
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 3.5e-65 252.3 225 55.6
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.1e-63 247.3 250 56.8
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 3.9e-56 222.2 164 68.3
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 6.6e-56 221.5 122 82.8
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 4.3e-55 218.8 225 50.2
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 2.8e-54 216.1 225 51.6
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.4e-50 203.8 204 49.5
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.3e-43 180.6 205 46.8
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 4.9e-43 178.7 231 42.4
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.9e-42 176.8 228 43.9
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 8.7e-40 167.9 208 50.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.9e-39 166.8 130 63.1
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.8e-38 162.2 100 76.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-37 160.6 100 75.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.7e-31 138.7 150 50.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.2e-26 122.9 72 76.4
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 8.2e-22 108.2 105 56.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 8.2e-22 108.2 66 69.7
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.2e-20 104.4 122 50.0
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.7e-19 100.5 79 63.3
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.2e-18 96.3 51 84.3
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.2e-18 96.3 51 84.3
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.2e-18 95.1 51 84.3
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 7.2e-18 95.1 81 59.3
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.4e-16 90.9 51 80.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 2.2e-14 83.6 76 59.2
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.0e-12 77.0 51 70.6
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.0e-12 77.0 51 74.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.5e-12 75.9 51 76.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.2e-11 73.6 223 30.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 7.2e-10 68.6 37 83.8
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 6.1e-09 65.5 56 64.3


User provided reference genes

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