Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 3.3e-95 351.7 175 100.0
MD16G1013000 Malus domestica HOM05D008187 ORTHO05D009830 3.1e-61 238.8 176 73.3
Prupe.1G338300 Prunus persica HOM05D008187 ORTHO05D009830 4.4e-47 191.8 175 59.4
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 1.5e-42 176.8 183 55.7
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 1.3e-38 163.7 173 55.5
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.6e-36 156.8 181 58.6
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 4.6e-36 155.2 181 58.0
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 5.9e-36 154.8 181 58.0
FAN22G0157 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.3e-35 153.7 181 57.5
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 1.7e-35 153.3 176 49.4
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 1.7e-35 153.3 178 55.6
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 2.3e-35 152.9 181 57.5
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 2.9e-35 152.5 180 53.3
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 5.0e-35 151.8 181 57.5
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 8.6e-35 151.0 173 52.6
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 8.6e-35 151.0 166 56.0
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 1.9e-34 149.8 174 51.1
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 4.3e-34 148.7 178 52.8
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 5.6e-34 148.3 178 50.6
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 1.2e-33 147.1 177 51.4
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 2.8e-33 146.0 175 48.6
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 1.0e-32 144.1 177 52.5
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 1.4e-32 143.7 143 55.9
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 2.0e-31 139.8 178 53.4
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 2.2e-30 136.3 143 57.3
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 2.2e-30 136.3 143 57.3
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 3.7e-30 135.6 168 51.8
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 3.7e-30 135.6 178 50.6
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 4.9e-30 135.2 176 51.7
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 8.3e-30 134.4 137 56.9
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 1.1e-29 134.0 176 48.9
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 1.1e-29 134.0 178 50.6
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 1.1e-29 134.0 175 49.7
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 1.1e-29 134.0 167 49.7
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 7.0e-29 131.3 178 50.6
Hma1.2p1_0441F.1_g153840 Hydrangea macrophylla HOM05D008187 ORTHO05D009830 9.5e-26 120.9 142 50.7
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 1.4e-24 117.1 170 45.9
Eucgr.B02651 Eucalyptus grandis HOM05D008187 ORTHO05D009830 1.8e-24 116.7 174 43.7
FAN17G0113 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.2e-23 114.0 145 55.2
TWI74G1547 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 9.8e-23 110.9 143 49.0
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 2.9e-22 109.4 128 51.6
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 3.7e-22 109.0 187 48.1
Rhsim09G0085300 Rhododendron simsii HOM05D008187 ORTHO05D009830 1.1e-21 107.5 175 42.3
CANSAT78G2356 Cannabis sativa HOM05D008187 ORTHO05D009830 1.9e-21 106.7 155 43.9
TWI77G0539 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 6.0e-20 101.7 155 42.6
Sed0002824 Sechium edule HOM05D008187 ORTHO05D009830 1.3e-19 100.5 131 44.3
Gohir.D04G188100 Gossypium hirsutum HOM05D008187 ORTHO05D009830 2.3e-19 99.8 172 44.8
Gohir.A04G143800 Gossypium hirsutum HOM05D008187 ORTHO05D009830 6.6e-19 98.2 172 43.0
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 2.5e-18 96.3 132 47.0
Gorai.012G183500 Gossypium raimondii HOM05D008187 ORTHO05D009830 4.3e-18 95.5 175 44.0
ClCG11G000980 Citrullus lanatus HOM05D008187 ORTHO05D009830 7.3e-18 94.7 133 46.6
Haze_10806 Corylus avellana HOM05D008187 ORTHO05D009830 6.2e-17 91.7 86 57.0
TPR.G11831 Trifolium pratense HOM05D008187 ORTHO05D009830 6.8e-16 88.2 99 51.5
MELO3C020063.2 Cucumis melo HOM05D008187 ORTHO05D009830 1.2e-15 87.4 127 43.3
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 2.0e-15 86.7 181 39.8
CsaV3_5G012950 Cucumis sativus L. HOM05D008187 ORTHO05D009830 5.8e-15 85.1 127 43.3
DCAR_026822 Daucus carota HOM05D008187 ORTHO05D009830 5.8e-15 85.1 177 36.7
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 9.9e-15 84.3 141 39.7
DCAR_023540 Daucus carota HOM05D008187 ORTHO05D009830 1.3e-14 84.0 172 35.5
Lj6A731T87 Lonicera japonica HOM05D008187 ORTHO05D009830 3.7e-14 82.4 132 37.9
TPR.G34432 Trifolium pratense HOM05D008187 ORTHO05D009830 4.9e-14 82.0 76 56.6
Haze_10807 Corylus avellana HOM05D008187 ORTHO05D009830 4.1e-13 79.0 60 70.0
HanXRQChr16g0527611 Helianthus annuus HOM05D008187 ORTHO05D009830 3.5e-12 75.9 180 35.6
THA.LOC104805100 Tarenaya hassleriana HOM05D010619 ORTHO05D009830 4.6e-12 75.5 138 39.1
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 1.0e-11 74.3 132 43.2
Lsat_1_v5_gn_4_24181 Lactuca sativa HOM05D008187 ORTHO05D009830 6.6e-11 71.6 143 37.8
TAR374G1419 Trochodendron aralioides HOM05D003603 ORTHO05D009830 8.6e-11 71.2 136 40.4
Nn3g18471 Nelumbo nucifera HOM05D008187 ORTHO05D009830 1.1e-10 70.9 229 32.3
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 3.6e-09 65.9 53 60.4
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 6.2e-09 65.1 54 57.4
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 6.8e-08 61.6 54 51.9
Thecc.03G009300 Theobroma cacao HOM05D000009 ORTHO05D009830 8.9e-08 61.2 68 47.1
HanXRQChr17g0566281 Helianthus annuus HOM05D008187 ORTHO05D009830 1.2e-07 60.8 145 35.2
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 3.4e-07 59.3 51 51.0
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 3.4e-07 59.3 127 33.9
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 4.4e-07 58.9 50 54.0
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 7.6e-07 58.2 58 48.3
BolC9t55912H Brassica oleracea HOM05D010619 ORTHO05D009830 7.6e-07 58.2 139 32.4
Oeu062660.1 Olea europaea HOM05D008187 ORTHO05D009830 1.7e-06 57.0 31 80.6
BcaC04g21548 Brassica carinata HOM05D010619 ORTHO05D009830 2.2e-06 56.6 139 30.9
C09p30500 Brassica napus HOM05D010619 ORTHO05D009830 2.2e-06 56.6 139 30.9
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 2.2e-06 56.6 54 50.0
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 2.9e-06 56.2 54 46.3
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 2.9e-06 56.2 56 51.8
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 2.9e-06 56.2 56 51.8
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 2.9e-06 56.2 56 50.0
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 3.8e-06 55.8 54 50.0
MSTRG.1790 Avicennia marina HOM05D003603 ORTHO05D004186 3.8e-06 55.8 79 34.2
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 3.8e-06 55.8 79 39.2
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 3.8e-06 55.8 46 52.2
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 3.8e-06 55.8 102 37.3
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 3.8e-06 55.8 102 37.3
BcaB07g30724 Brassica carinata HOM05D010619 ORTHO05D009830 4.9e-06 55.5 136 32.4
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 4.9e-06 55.5 52 50.0
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 4.9e-06 55.5 59 45.8
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 4.9e-06 55.5 70 44.3
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 6.4e-06 55.1 54 44.4
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 6.4e-06 55.1 86 38.4
HPP92_005435 Vanilla planifolia HOM05D003603 ORTHO05D004186 6.4e-06 55.1 57 45.6
HPP92_005441 Vanilla planifolia HOM05D003603 ORTHO05D004186 6.4e-06 55.1 57 45.6
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 8.4e-06 54.7 52 48.1
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 8.4e-06 54.7 52 50.0
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 8.4e-06 54.7 52 50.0
ClCG10G001200 Citrullus lanatus HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 51.0
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 51.0
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 51.0
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 49.0
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 52.9
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 8.4e-06 54.7 44 52.3
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 8.4e-06 54.7 52 50.0
Sed0026512 Sechium edule HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 51.0
Hund11105 Selenicereus undatus HOM05D003603 ORTHO05D004186 8.4e-06 54.7 51 45.1


User provided reference genes

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