Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.9e-134 481.9 243 100.0
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.2e-104 382.1 198 94.4
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 2.1e-100 369.4 244 75.8
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.8e-99 366.3 216 82.4
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.7e-97 359.8 198 86.9
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 9.9e-90 334.0 212 78.3
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 9.3e-88 327.4 199 77.9
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.6e-87 326.6 199 75.9
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.7e-87 325.9 210 74.3
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 7.9e-87 324.3 198 75.8
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.0e-86 323.9 199 76.4
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 5.1e-86 321.6 201 72.6
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 8.7e-86 320.9 198 76.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 8.7e-86 320.9 201 75.1
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 1.5e-85 320.1 196 76.5
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.5e-85 319.3 198 71.2
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.3e-85 318.9 197 77.2
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 4.3e-85 318.5 201 73.1
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 5.6e-85 318.2 198 75.3
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 7.4e-85 317.8 198 72.7
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 9.6e-85 317.4 198 73.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 9.6e-85 317.4 200 73.5
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.7e-84 315.5 198 75.8
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.7e-84 315.5 201 72.1
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 6.2e-84 314.7 200 69.5
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.4e-83 313.5 198 74.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 2.4e-83 312.8 196 73.5
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 3.1e-83 312.4 200 74.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 3.1e-83 312.4 200 73.0
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 5.3e-83 311.6 198 74.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.3e-83 311.6 194 75.8
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 6.9e-83 311.2 199 73.4
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 2.0e-82 309.7 198 73.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.0e-82 309.7 198 72.2
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.0e-82 309.7 197 70.6
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.6e-82 309.3 198 72.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 3.4e-82 308.9 197 76.6
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 3.4e-82 308.9 200 69.5
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.4e-82 308.9 198 74.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 5.8e-82 308.1 200 73.0
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 5.8e-82 308.1 198 74.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 7.6e-82 307.8 200 73.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 7.6e-82 307.8 198 70.7
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.7e-81 306.6 198 70.2
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.7e-81 306.6 198 72.2
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.2e-81 306.2 198 71.7
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 2.2e-81 306.2 198 71.2
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.9e-81 305.8 198 70.2
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.9e-81 305.8 195 70.8
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 3.8e-81 305.4 198 72.2
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 8.4e-81 304.3 198 73.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 8.4e-81 304.3 198 72.2
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 8.4e-81 304.3 198 70.7
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.1e-80 303.9 197 72.6
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.9e-80 303.1 183 76.5
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.5e-80 302.8 197 69.5
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.5e-80 302.8 186 76.3
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 4.2e-80 302.0 201 69.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 4.2e-80 302.0 196 71.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 5.5e-80 301.6 198 72.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 7.1e-80 301.2 205 70.7
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 7.1e-80 301.2 198 72.2
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 9.3e-80 300.8 197 71.6
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.6e-79 300.1 211 69.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.1e-79 299.7 201 68.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 2.1e-79 299.7 189 73.0
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 2.1e-79 299.7 198 71.2
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.5e-79 298.9 198 70.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.0e-78 297.4 184 73.4
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.0e-78 297.4 183 75.4
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.0e-78 297.4 198 71.2
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.3e-78 297.0 186 75.8
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.8e-78 296.6 199 68.3
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.3e-78 296.2 184 72.8
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.3e-78 296.2 184 72.8
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 3.9e-78 295.4 199 73.9
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 3.9e-78 295.4 217 65.9
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 6.7e-78 294.7 198 68.7
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 6.7e-78 294.7 198 70.7
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 6.7e-78 294.7 198 69.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.1e-77 293.9 198 70.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.9e-77 293.1 198 68.2
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.3e-77 292.4 222 64.4
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.3e-77 292.4 197 68.5
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.3e-77 292.4 198 67.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.3e-77 292.0 195 72.8
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 4.3e-77 292.0 199 67.3
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 7.4e-77 291.2 198 70.7
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 7.4e-77 291.2 198 68.2
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 9.6e-77 290.8 186 73.7
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.6e-76 290.0 198 67.7
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.6e-76 290.0 198 68.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.7e-76 288.9 194 67.0
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.7e-76 288.9 198 66.2
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 6.2e-76 288.1 198 67.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.1e-75 287.3 194 70.1
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.1e-75 287.3 198 65.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.1e-75 287.3 198 69.7
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.4e-75 287.0 218 64.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 4.0e-75 285.4 183 70.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.6e-74 282.7 191 69.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 5.8e-74 281.6 199 64.8
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 5.8e-74 281.6 198 65.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.0e-73 280.8 198 65.2
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.3e-73 280.4 195 67.7
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.9e-73 279.3 187 69.5
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.9e-73 279.3 196 64.8
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.9e-73 279.3 195 68.2
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.8e-73 278.9 198 63.6
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 4.9e-73 278.5 201 64.7
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 7.1e-72 274.6 198 63.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 3.5e-71 272.3 196 66.8
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 3.0e-70 269.2 198 63.6
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.1e-70 268.5 178 69.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.9e-69 266.5 183 69.9
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.5e-66 256.9 198 60.6
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 6.5e-65 251.5 187 61.5
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 5.5e-64 248.4 190 64.2
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.1e-61 240.7 183 62.8
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 4.8e-60 235.3 166 67.5
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.4e-59 233.8 144 70.1
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.9e-58 228.4 169 63.3
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.3e-57 227.3 187 55.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 2.9e-57 226.1 144 71.5
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.4e-56 223.8 143 70.6
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.2e-55 220.7 207 50.2
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.6e-55 219.2 200 53.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.0e-54 217.6 172 62.2
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.2e-52 209.9 156 61.5
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 3.1e-51 206.1 181 51.4
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.6e-50 203.0 144 60.4
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.8e-46 190.3 114 71.9
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.1e-43 181.0 198 50.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 4.1e-43 179.1 125 67.2
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 5.3e-43 178.7 98 77.6
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 6.5e-41 171.8 199 46.7
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 4.0e-38 162.5 185 48.6
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.0e-37 160.2 181 45.3
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.1e-31 140.2 248 34.7
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 1.6e-26 124.0 186 37.1
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 5.0e-25 119.0 83 62.7
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 8.6e-25 118.2 85 68.2
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.2e-24 115.9 107 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 5.2e-22 109.0 129 44.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.2e-21 107.8 193 38.9
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 7.5e-21 105.1 126 44.4
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 7.5e-21 105.1 129 43.4
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 6.6e-17 92.0 71 59.2
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.3e-16 89.7 64 57.8
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.1e-15 87.0 58 70.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.5e-10 69.7 46 63.0
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 4.3e-08 62.8 38 73.7


User provided reference genes

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