Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1002800 Malus domestica HOM05D007982 ORTHO05D010255 5.5e-292 1006.9 510 100.0
Prupe.1G349600 Prunus persica HOM05D007982 ORTHO05D010255 4.6e-214 748.0 513 78.6
QL01p000856 Quercus lobata HOM05D007982 ORTHO05D010255 3.8e-192 675.2 529 66.2
Cfa018656 Carpinus fangiana HOM05D007982 ORTHO05D010255 7.0e-186 654.4 527 64.3
RhsimUnG0103100 Rhododendron simsii HOM05D007982 ORTHO05D010255 8.8e-181 637.5 459 69.5
COL.COLO4_02959 Corchorus olitorius HOM05D007982 ORTHO05D010255 3.1e-178 629.0 482 65.4
PGR142G3837 Punica granatum HOM05D007982 ORTHO05D010255 2.9e-176 622.5 478 64.4
Hma1.2p1_0044F.1_g026360 Hydrangea macrophylla HOM05D007982 ORTHO05D010255 2.5e-175 619.4 467 65.3
CSS0047094 Camellia sinensis var. sinensis HOM05D007982 ORTHO05D010255 2.1e-174 616.3 472 66.5
Thecc.02G154200 Theobroma cacao HOM05D007982 ORTHO05D010255 2.3e-173 612.8 489 63.8
GSVIVG01034385001 Vitis vinifera HOM05D007982 ORTHO05D010255 2.0e-172 609.8 467 66.4
Dinv07497 Davidia involucrata HOM05D007982 ORTHO05D010255 1.1e-167 594.0 472 64.8
Nn4g25166 Nelumbo nucifera HOM05D007982 ORTHO05D010255 4.0e-165 585.5 460 63.3
Ciclev10031355m.g Citrus clementina HOM05D007982 ORTHO05D010255 1.7e-163 580.1 489 62.2
CANSAT78G2255 Cannabis sativa HOM05D007982 ORTHO05D010255 2.7e-161 572.8 462 64.7
Migut.E00677 Erythranthe guttata HOM05D007982 ORTHO05D010255 2.3e-160 569.7 461 62.5
Nitab4.5_0003038g0010 Nicotiana tabacum HOM05D007982 ORTHO05D010255 2.1e-158 563.1 491 58.2
Sopen04g004060 Solanum pennellii HOM05D007982 ORTHO05D010255 2.1e-158 563.1 468 60.5
Solyc04g008880.4 Solanum lycopersicum HOM05D007982 ORTHO05D010255 8.0e-158 561.2 491 58.9
Nitab4.5_0001379g0110 Nicotiana tabacum HOM05D007982 ORTHO05D010255 1.4e-157 560.5 479 59.3
Peaxi162Scf00681g00437 Petunia axillaris HOM05D007982 ORTHO05D010255 2.3e-157 559.7 497 57.5
Aqoxy3G04317 Aquilegia oxysepala HOM05D007982 ORTHO05D010255 4.4e-156 555.4 466 60.9
Gohir.A12G132500 Gossypium hirsutum HOM05D007982 ORTHO05D010255 2.9e-155 552.7 517 56.3
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-154 550.8 500 57.2
Gohir.D12G136100 Gossypium hirsutum HOM05D007982 ORTHO05D010255 1.4e-154 550.4 523 56.2
PGSC0003DMG400025302 Solanum tuberosum HOM05D007982 ORTHO05D010255 4.1e-154 548.9 503 56.1
Gorai.008G147300 Gossypium raimondii HOM05D007982 ORTHO05D010255 2.7e-153 546.2 521 56.0
Haze_17412 Corylus avellana HOM05D007982 ORTHO05D010255 9.5e-151 537.7 526 56.7
Actinidia04353 Actinidia chinensis HOM05D007982 ORTHO05D010255 1.6e-126 457.2 353 65.7
HPP92_015183 Vanilla planifolia HOM05D007982 ORTHO05D010255 2.0e-124 450.3 526 48.7
Pp3c22_18880 Physcomitrium patens HOM05D007982 ORTHO05D010255 6.2e-110 402.1 490 45.1
Mapoly0001s0484 Marchantia polymorpha HOM05D007982 ORTHO05D010255 1.6e-105 387.5 502 43.2
SMO259G0034 Selaginella moellendorffii HOM05D007982 ORTHO05D010255 2.1e-105 387.1 458 45.9
AagrBONN_evm.TU.Sc2ySwM_362.2345 Anthoceros agrestis HOM05D007982 ORTHO05D010255 1.3e-99 367.9 400 51.2
Atru.chr11.1247 Acer truncatum HOM05D007982 ORTHO05D010255 2.0e-92 344.0 299 60.5
Cpa.g.c40876 Carica papaya HOM05D007982 ORTHO05D010255 3.4e-92 343.2 271 62.4
Oeu027929.1 Olea europaea HOM05D007982 ORTHO05D010255 1.9e-82 310.8 452 41.4
FAN17G1590 Fragaria x ananassa HOM05D007982 ORTHO05D010255 6.1e-73 279.3 322 53.4
SEGI_18232 Sequoiadendron giganteum HOM05D007982 ORTHO05D010255 1.7e-62 244.6 237 51.1
SEGI_24738 Sequoiadendron giganteum HOM05D007982 ORTHO05D010255 1.7e-62 244.6 237 51.1
SalBow2G1914 Salvia bowleyana HOM05D007982 ORTHO05D010255 4.1e-61 240.0 194 57.2
FAN12G3848 Fragaria x ananassa HOM05D007982 ORTHO05D010255 3.8e-59 233.4 178 69.1
FvH4_4g37200 Fragaria vesca HOM05D007982 ORTHO05D010255 2.5e-58 230.7 266 51.5
Atru.chr11.1266 Acer truncatum HOM05D007982 ORTHO05D010255 1.2e-57 228.4 227 55.9
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 7.5e-55 219.2 234 51.3
Cpa.g.sc138.6 Carica papaya HOM05D007982 ORTHO05D010255 2.2e-54 217.6 182 63.7
PRCOL_00006233 Prasinoderma coloniale HOM05D007982 ORTHO05D010255 2.8e-54 217.2 517 32.5
MBI17_g03293_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.5e-50 203.0 182 56.6
MBI19_g41559_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.8e-46 190.7 178 53.4
MBI09_g17621_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 4.9e-46 189.9 178 53.9
MBI09_g40719_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 8.3e-46 189.1 178 53.9
MBI05_g11582_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.7e-43 181.4 169 54.4
MBI14_g39939_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 8.6e-43 179.1 179 53.6
MBI04_g26113_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.3e-40 171.0 163 53.4
SEGI_11934 Sequoiadendron giganteum HOM05D007982 ORTHO05D010255 2.3e-40 171.0 183 52.5
Gohir.D13G112900 Gossypium hirsutum HOM05D007982 ORTHO05D010255 6.6e-35 152.9 158 51.3
MBI18_g19089_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.6e-35 152.9 177 46.3
MBI09_g45432_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.2e-33 146.4 121 57.9
MBI18_g45738_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-32 145.6 138 51.4
MBI18_g03299_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.2e-32 143.3 138 51.4
Gorai.003G023800 Gossypium raimondii HOM05D007982 ORTHO05D010255 8.6e-27 125.9 113 57.5
Gohir.D03G023166 Gossypium hirsutum HOM05D007982 ORTHO05D010255 1.5e-26 125.2 114 57.9
Cpa.g.sc138.10 Carica papaya HOM05D007982 ORTHO05D010255 4.9e-22 110.2 272 30.9
Pp3s92_70 Physcomitrium patens HOM05D007982 ORTHO05D034158 3.5e-20 104.0 361 28.3
Cpa.g.sc138.4 Carica papaya HOM05D007982 ORTHO05D010255 6.0e-20 103.2 76 60.5
Nitab4.5_0003088g0030 Nicotiana tabacum HOM05D007982 ORTHO05D010293 6.0e-20 103.2 196 33.7
MBI06_g30604_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 3.3e-18 97.4 128 41.4
Gohir.D06G142033 Gossypium hirsutum HOM05D007982 ORTHO05D010255 1.6e-17 95.1 75 61.3
Nitab4.5_0001462g0020 Nicotiana tabacum HOM05D007982 ORTHO05D010255 8.1e-17 92.8 182 34.1
Nitab4.5_0001462g0030 Nicotiana tabacum HOM05D007982 ORTHO05D286115 5.4e-13 80.1 120 39.2
FAN12G3608 Fragaria x ananassa HOM05D007982 ORTHO05D010255 7.8e-12 76.3 156 35.3
Nitab4.5_0001297g0080 Nicotiana tabacum HOM05D007982 ORTHO05D010255 2.1e-09 68.2 146 30.1
Gorai.010G165700 Gossypium raimondii HOM05D000288 ORTHO05D000173 4.8e-09 67.0 74 45.9
Nitab4.5_0000082g0440 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.5e-07 62.0 107 30.8
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.4e-07 60.8 109 32.1
Nitab4.5_0001269g0080 Nicotiana tabacum HOM05D009415 ORTHO05D008933 8.4e-06 56.2 88 33.0


User provided reference genes

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