Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 1.9e-119 432.6 223 100.0
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.4e-61 240.4 185 70.3
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 5.2e-61 238.4 185 69.7
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.8e-61 238.0 185 69.7
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 4.9e-59 231.9 209 63.2
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 6.6e-48 194.9 196 60.7
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 2.3e-40 169.9 129 71.3
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 1.6e-38 163.7 128 68.8
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.4e-37 160.6 125 69.6
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 1.8e-37 160.2 121 71.1
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 2.4e-37 159.8 121 72.7
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 6.9e-37 158.3 123 65.9
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 8.9e-37 157.9 119 70.6
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.5e-36 157.1 119 71.4
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 1.5e-36 157.1 118 70.3
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 1.5e-36 157.1 121 69.4
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 3.4e-36 156.0 129 65.9
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 3.4e-36 156.0 120 70.8
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.3e-35 154.1 124 66.1
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 3.8e-35 152.5 127 66.1
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 6.4e-35 151.8 133 61.7
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 8.4e-35 151.4 117 68.4
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.1e-34 151.0 127 66.1
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.4e-34 150.6 125 67.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 1.9e-34 150.2 118 71.2
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.9e-34 150.2 118 66.9
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 2.4e-34 149.8 128 63.3
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 3.2e-34 149.4 117 70.1
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 4.2e-34 149.1 118 66.1
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 9.3e-34 147.9 119 71.4
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 1.2e-33 147.5 119 67.2
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 2.7e-33 146.4 120 66.7
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 7.8e-33 144.8 124 66.1
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.0e-32 144.4 130 62.3
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.0e-32 144.4 117 67.5
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.7e-32 143.7 142 59.2
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.3e-32 143.3 116 65.5
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.3e-32 143.3 130 63.1
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 8.7e-32 141.4 130 61.5
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.5e-31 140.6 209 43.1
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 2.5e-31 139.8 128 60.2
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 3.3e-31 139.4 129 62.0
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 3.3e-31 139.4 130 60.8
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 4.3e-31 139.0 111 64.0
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 4.3e-31 139.0 118 62.7
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 4.3e-31 139.0 147 57.1
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.3e-30 137.5 142 57.0
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.3e-30 137.5 214 43.5
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.3e-30 137.5 105 65.7
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 2.1e-30 136.7 115 64.3
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 2.1e-30 136.7 125 60.0
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 4.8e-30 135.6 133 59.4
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 6.2e-30 135.2 142 54.9
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 6.2e-30 135.2 119 62.2
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 8.1e-30 134.8 131 61.1
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.4e-29 134.0 122 61.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.4e-29 134.0 117 65.0
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.8e-29 133.7 114 64.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.8e-29 133.7 119 63.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.4e-29 133.3 115 61.7
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.4e-29 133.3 115 63.5
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 6.9e-29 131.7 117 64.1
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 9.0e-29 131.3 124 59.7
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 9.0e-29 131.3 124 62.9
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.2e-28 131.0 134 55.2
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.5e-28 130.6 134 55.2
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 4.5e-28 129.0 114 64.0
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 4.5e-28 129.0 133 61.7
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.3e-27 127.5 142 56.3
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 3.8e-27 125.9 120 58.3
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 4.9e-27 125.6 117 60.7
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.9e-27 125.6 114 59.6
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 6.4e-27 125.2 113 61.9
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.4e-26 123.2 117 60.7
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.4e-26 123.2 115 59.1
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 4.2e-26 122.5 118 61.9
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.2e-26 122.5 118 61.0
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 7.1e-26 121.7 105 61.9
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 2.1e-25 120.2 105 63.8
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 1.0e-24 117.9 122 59.0
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.0e-24 116.3 157 47.1
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 3.0e-24 116.3 139 49.6
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 5.6e-23 112.1 119 57.1
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 5.6e-23 112.1 112 58.9
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 2.1e-22 110.2 77 71.4
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 2.8e-22 109.8 77 71.4
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 3.6e-22 109.4 119 56.3
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 3.6e-22 109.4 119 56.3
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 3.6e-22 109.4 119 56.3
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 2.4e-21 106.7 121 55.4
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 3.1e-21 106.3 125 52.8
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 3.1e-21 106.3 120 55.0
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 3.1e-21 106.3 120 55.0
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 6.9e-21 105.1 121 55.4
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.5e-20 104.0 109 55.0
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 1.5e-20 104.0 128 47.7
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.0e-20 103.6 107 58.9
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 2.6e-20 103.2 174 42.5
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 5.8e-20 102.1 200 37.5
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 7.6e-20 101.7 62 79.0
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.2e-19 100.1 142 48.6
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 3.2e-18 96.3 69 72.5
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 1.2e-17 94.4 114 44.7
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.3e-16 90.9 112 53.6
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 5.1e-16 89.0 139 41.7
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.1e-15 87.8 85 63.5
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.1e-15 87.8 76 63.2
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.5e-15 87.4 77 61.0
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.5e-15 87.4 77 61.0
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 5.6e-15 85.5 106 54.7
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 7.4e-15 85.1 137 40.9
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 3.2e-10 69.7 156 35.9
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 6.7e-08 62.0 86 52.3
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 1.1e-07 61.2 40 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 1.9e-07 60.5 159 31.4
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.3e-06 57.8 27 96.3
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-06 56.6 88 37.5
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 8.2e-06 55.1 50 52.0


User provided reference genes

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