Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 0.0e+00 1501.5 752 100.0
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 0.0e+00 1182.5 660 84.7
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 0.0e+00 1146.7 693 78.5
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 0.0e+00 1122.8 695 76.1
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 0.0e+00 1083.9 703 73.0
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 2.6e-311 1071.6 703 72.1
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.9e-305 1050.8 702 71.1
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 4.9e-305 1050.8 702 71.1
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.6e-303 1045.8 750 66.8
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.0e-302 1041.6 701 69.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.3e-301 1037.7 703 69.7
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 4.5e-298 1027.7 704 68.5
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 3.8e-297 1024.6 709 69.5
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 3.8e-297 1024.6 705 69.1
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.9e-297 1024.2 702 67.8
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 6.4e-297 1023.8 698 68.9
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.2e-295 1019.6 701 69.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.1e-292 1008.8 703 67.1
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.6e-290 1001.9 702 66.8
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 4.5e-290 1001.1 706 67.1
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.7e-289 999.2 703 66.3
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 2.9e-289 998.4 700 67.6
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 7.4e-285 983.8 700 66.1
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 9.7e-285 983.4 704 66.8
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 2.8e-284 981.9 696 67.4
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 6.3e-284 980.7 699 66.8
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.4e-283 979.5 700 66.6
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 3.1e-283 978.4 761 61.8
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 4.1e-283 978.0 696 67.0
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.5e-280 968.8 703 65.4
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 9.3e-280 966.8 696 65.8
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.2e-279 966.5 703 65.9
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.3e-278 963.0 703 65.1
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.3e-276 956.4 700 65.1
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 8.2e-276 953.7 704 65.9
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.0e-273 946.8 701 65.8
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.9e-272 942.6 696 64.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 4.2e-272 941.4 701 64.6
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.0e-270 936.8 700 64.7
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.0e-269 932.6 702 64.1
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.0e-269 932.6 701 63.8
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 8.2e-268 927.2 722 62.2
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.4e-267 926.4 706 63.2
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 3.1e-267 925.2 709 63.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 2.3e-262 909.1 704 61.2
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.6e-261 905.6 704 61.4
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.4e-259 899.0 707 61.4
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 3.1e-259 898.7 700 62.0
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.1e-259 898.3 704 63.2
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 5.3e-259 897.9 703 60.6
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 7.0e-259 897.5 706 62.6
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.0e-258 896.0 698 62.6
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 5.9e-258 894.4 704 60.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.9e-256 889.4 704 60.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 4.7e-255 884.8 704 59.9
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.5e-253 879.8 627 67.1
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.0e-253 879.4 702 61.3
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.0e-253 879.4 698 61.6
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.7e-252 876.3 705 59.7
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.4e-251 873.2 619 67.0
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.8e-251 872.8 688 60.3
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 7.0e-251 870.9 702 60.1
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 9.1e-251 870.5 702 60.1
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.7e-250 869.0 703 60.3
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.2e-249 865.9 703 60.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.9e-249 865.5 699 59.8
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.5e-248 862.4 700 59.6
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 3.2e-248 862.1 704 58.9
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 5.7e-245 851.3 701 58.9
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 4.1e-243 845.1 701 60.5
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 9.1e-243 844.0 699 59.7
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 4.2e-240 835.1 699 58.5
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 9.5e-240 833.9 695 58.4
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 6.1e-239 831.2 761 55.1
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.0e-238 830.5 699 57.7
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.8e-238 829.7 712 58.7
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.3e-233 813.5 660 58.9
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.9e-232 809.7 699 57.2
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.2e-231 807.0 547 69.3
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 3.2e-227 792.3 699 56.1
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 7.8e-226 787.7 699 55.5
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 3.4e-221 772.3 702 55.6
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.8e-221 771.5 715 52.2
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.3e-220 770.4 714 52.5
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 4.1e-219 765.4 680 55.7
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.2e-218 763.8 712 53.2
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.3e-217 760.4 663 56.9
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.9e-211 740.0 651 56.4
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 8.6e-209 731.1 632 56.5
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.2e-207 727.2 688 54.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.2e-204 716.5 695 52.5
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 4.9e-204 715.3 691 52.8
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.8e-194 681.4 717 47.6
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 2.1e-186 656.8 720 46.8
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 9.9e-181 637.9 583 55.7
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.8e-180 636.0 695 48.8
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 7.1e-179 631.7 646 52.5
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 8.7e-177 624.8 480 62.1
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 2.6e-152 543.5 358 72.1
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 9.7e-152 541.6 488 55.9
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 4.8e-143 512.7 431 58.5
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.5e-131 474.6 678 39.1
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.2e-128 464.9 715 36.6
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.9e-123 447.6 334 72.2
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.0e-121 439.9 777 36.7
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.4e-118 431.4 701 36.7
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.6e-117 427.9 615 39.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.3e-116 424.9 677 37.5
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.5e-115 421.4 365 56.2
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.4e-110 402.9 756 34.8
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.6e-104 384.0 759 33.5
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.2e-101 375.2 344 52.9
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.1e-83 315.5 163 90.8
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.4e-81 308.5 285 55.1
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.1e-67 262.3 564 30.7
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.6e-66 258.5 176 70.5
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-62 245.4 190 60.5
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.0e-60 239.2 138 79.7
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.0e-56 224.9 139 75.5
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.5e-55 219.9 326 36.8
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.2e-42 176.4 484 28.9
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 5.5e-38 163.7 123 62.6
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.0e-31 140.6 127 48.0
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 2.4e-25 121.7 120 56.7
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.1e-22 112.8 103 51.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.5e-22 111.7 75 65.3
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.2e-15 88.6 413 23.5
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.5e-14 84.0 80 48.8
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.4e-14 83.2 80 48.8
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.8e-09 68.9 168 32.1
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.7e-07 62.4 104 37.5
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.7e-07 62.4 65 52.3
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 2.5e-06 58.5 39 66.7
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 9.5e-06 56.6 48 58.3


User provided reference genes

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