Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 8.9e-153 543.5 262 100.0
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 3.2e-110 402.1 262 76.3
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.8e-108 396.4 268 74.3
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.1e-105 385.6 248 75.0
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.2e-103 379.4 262 71.8
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.0e-96 356.3 242 71.5
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 5.9e-96 354.8 254 67.7
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 2.2e-95 352.8 252 67.5
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 1.1e-94 350.5 251 67.3
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 3.2e-94 349.0 226 72.1
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.2e-93 347.1 214 72.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.2e-93 347.1 214 72.0
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.2e-93 347.1 208 76.9
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 2.7e-93 345.9 210 73.8
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 7.9e-93 344.4 202 78.2
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 5.1e-92 341.7 206 72.8
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 6.7e-92 341.3 255 64.7
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 6.7e-92 341.3 252 65.5
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 6.7e-92 341.3 228 68.9
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 1.1e-91 340.5 224 70.5
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 2.5e-91 339.3 213 73.7
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 4.3e-91 338.6 212 72.6
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 9.7e-91 337.4 214 72.0
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 2.2e-90 336.3 212 71.7
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 2.8e-90 335.9 215 73.0
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 2.4e-89 332.8 232 65.5
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 2.4e-89 332.8 215 69.8
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 3.1e-89 332.4 213 70.4
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 4.1e-89 332.0 205 73.7
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 4.1e-89 332.0 215 69.8
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 6.9e-89 331.3 220 70.0
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 9.1e-89 330.9 227 69.6
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.5e-88 330.1 204 73.5
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 2.0e-88 329.7 238 62.2
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 2.0e-88 329.7 220 70.9
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 2.6e-88 329.3 200 75.0
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 7.7e-88 327.8 215 67.4
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 7.7e-88 327.8 227 69.6
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 7.7e-88 327.8 258 61.6
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 1.0e-87 327.4 224 71.4
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 1.0e-87 327.4 221 69.2
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 1.3e-87 327.0 216 67.1
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 6.5e-87 324.7 204 68.6
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 8.5e-87 324.3 237 63.7
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.4e-86 323.6 201 73.1
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.4e-86 323.6 212 68.9
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 1.9e-86 323.2 205 71.2
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.2e-86 322.4 208 68.8
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 3.2e-86 322.4 212 68.9
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 5.5e-86 321.6 221 68.3
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 7.2e-86 321.2 228 65.4
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 3.6e-85 318.9 234 63.7
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 3.6e-85 318.9 196 73.0
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 7.9e-85 317.8 196 72.4
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.9e-84 315.5 255 60.0
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 6.7e-84 314.7 238 60.5
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 8.8e-84 314.3 255 58.8
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 1.5e-83 313.5 233 63.5
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.4e-81 307.0 206 62.6
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 1.8e-81 306.6 240 60.4
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 1.8e-81 306.6 252 59.1
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 5.3e-81 305.1 220 61.4
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 1.2e-80 303.9 197 68.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 1.5e-80 303.5 197 67.5
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.0e-80 303.1 205 67.8
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 2.6e-80 302.8 253 54.5
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 3.5e-80 302.4 231 59.7
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 3.5e-80 302.4 231 60.2
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 7.7e-80 301.2 205 66.8
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.3e-79 300.4 206 67.0
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.2e-79 299.7 206 67.0
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 7.2e-78 294.7 197 66.5
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 2.1e-77 293.1 220 60.5
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 2.7e-77 292.7 238 58.4
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 1.0e-76 290.8 162 80.2
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 5.2e-76 288.5 199 61.8
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 7.4e-75 284.6 166 75.3
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 2.8e-74 282.7 222 59.5
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 1.8e-73 280.0 188 72.3
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 5.3e-73 278.5 173 74.6
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 7.0e-73 278.1 173 69.4
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.5e-72 275.8 170 74.1
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.8e-71 272.3 168 72.6
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 5.0e-71 271.9 178 69.1
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 2.7e-69 266.2 258 55.4
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 4.7e-69 265.4 175 67.4
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.4e-65 253.8 189 60.8
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 4.5e-64 248.8 192 56.8
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.7e-63 246.9 193 55.4
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 2.9e-63 246.1 133 81.2
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 3.2e-62 242.7 205 55.6
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 1.6e-61 240.4 194 54.6
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 4.7e-61 238.8 170 64.1
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 6.1e-61 238.4 162 70.4
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 2.0e-59 233.4 133 84.2
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 1.8e-57 226.9 137 69.3
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 9.1e-57 224.6 165 59.4
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 3.7e-50 202.6 121 76.0
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.3e-47 194.1 200 47.5
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.2e-43 181.0 102 74.5
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 7.5e-43 178.3 210 44.8
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 3.2e-41 172.9 198 44.4
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.1e-38 164.5 145 53.8
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.9e-38 163.7 182 41.2
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.0e-35 153.7 81 84.0
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 2.3e-31 140.2 77 85.7
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.5e-30 137.5 92 65.2
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 9.2e-25 118.2 88 60.2
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 6.8e-20 102.1 60 75.0
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 4.9e-18 95.9 55 78.2
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.2e-16 91.3 54 74.1
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 3.5e-16 89.7 79 50.6
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 3.5e-16 89.7 65 58.5
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 7.8e-16 88.6 71 56.3
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.3e-13 81.3 75 50.7
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 5.3e-12 75.9 92 45.7
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 5.3e-12 75.9 92 45.7
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 5.3e-12 75.9 92 45.7
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 5.3e-12 75.9 92 45.7
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.5e-11 74.3 91 45.1
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 1.9e-06 57.4 34 67.6


User provided reference genes

Program Settings