Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 0.0e+00 1269.2 634 100.0
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.0e-274 949.9 640 76.1
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.0e-274 949.9 640 76.1
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.3e-274 949.5 641 75.7
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-272 943.0 643 75.3
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 3.0e-271 938.3 641 75.2
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.1e-252 876.7 542 81.0
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.1e-241 840.1 673 67.3
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.1e-225 786.9 639 63.4
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 2.5e-225 785.8 646 62.1
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 5.5e-225 784.6 643 62.5
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.2e-224 783.5 633 64.8
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 4.7e-224 781.6 638 63.8
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.4e-220 769.2 635 62.5
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 7.0e-220 767.7 628 62.3
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.6e-219 766.5 639 61.7
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.6e-219 766.5 624 63.0
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 3.5e-219 765.4 631 61.8
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 1.7e-218 763.1 631 61.3
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.1e-217 760.4 643 60.5
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.6e-216 756.5 631 61.0
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.6e-216 756.5 631 61.8
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 3.6e-216 755.4 640 61.7
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 3.6e-216 755.4 636 62.3
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.4e-215 753.4 635 60.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 3.1e-215 752.3 627 62.2
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 5.2e-215 751.5 632 61.2
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 5.2e-215 751.5 637 60.1
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 8.9e-215 750.7 639 61.3
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.6e-214 749.2 633 61.3
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 9.8e-214 747.3 506 73.1
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.7e-213 746.5 631 62.1
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.1e-212 743.8 651 58.7
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 9.2e-212 740.7 634 59.5
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 6.0e-211 738.0 642 60.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 7.8e-211 737.6 611 61.7
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.0e-210 737.3 633 59.4
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.0e-210 737.3 626 61.7
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.3e-210 736.9 633 59.9
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 8.6e-210 734.2 642 59.8
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 4.3e-209 731.9 642 60.3
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.1e-204 717.2 634 58.8
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.6e-203 711.8 632 59.7
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 2.3e-202 709.5 635 57.6
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.1e-201 707.2 635 57.5
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.5e-201 706.8 641 57.4
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.9e-201 706.4 642 59.7
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 8.1e-200 701.0 622 58.4
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 8.9e-199 697.6 541 64.9
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 4.9e-197 691.8 650 55.8
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 6.4e-197 691.4 648 56.5
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 2.4e-196 689.5 645 56.9
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 9.2e-196 687.6 622 56.9
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.0e-194 684.1 635 54.3
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.0e-194 684.1 641 55.7
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 1.7e-194 683.3 636 56.1
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 3.9e-194 682.2 641 56.2
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.5e-193 680.2 639 55.2
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 2.5e-193 679.5 641 55.9
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 4.3e-193 678.7 646 55.1
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 6.2e-192 674.9 633 55.3
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.8e-191 673.3 638 56.1
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 6.8e-191 671.4 642 54.8
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 6.8e-191 671.4 587 59.8
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 9.9e-190 667.5 627 55.8
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 6.4e-189 664.8 641 55.5
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 6.4e-189 664.8 633 53.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 3.3e-185 652.5 441 71.4
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 3.3e-185 652.5 636 54.2
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 2.1e-184 649.8 643 54.4
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.1e-180 637.5 402 76.1
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.4e-180 636.3 510 62.0
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.2e-180 636.0 510 62.0
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 5.4e-180 635.2 637 52.6
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 2.7e-179 632.9 593 56.2
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 6.6e-178 628.2 629 52.1
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 5.6e-177 625.2 639 53.4
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.8e-176 622.1 638 52.0
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 4.8e-176 622.1 443 68.6
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 2.2e-173 613.2 510 60.0
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 6.0e-171 605.1 622 51.6
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 6.9e-167 591.7 387 73.9
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.5e-166 590.5 555 54.6
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.9e-165 586.3 701 47.8
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.9e-164 583.6 555 53.7
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.6e-163 580.5 489 58.3
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 3.0e-162 576.2 634 51.4
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.3e-160 570.9 387 70.5
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.4e-158 562.8 536 56.0
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.7e-157 560.5 387 69.5
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.9e-157 559.7 387 69.5
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.8e-157 559.3 393 67.7
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.8e-157 559.3 393 67.7
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.3e-154 550.1 528 56.4
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.4e-151 540.0 500 55.8
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 5.1e-146 522.3 452 61.3
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 8.8e-146 521.5 555 50.3
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 9.7e-145 518.1 486 57.8
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.8e-141 506.1 586 48.1
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 3.2e-140 503.1 499 51.3
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.6e-139 500.7 537 50.8
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.8e-138 497.3 494 54.7
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 5.1e-138 495.7 460 57.0
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 2.3e-130 470.3 489 51.9
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 6.5e-125 452.2 397 58.2
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.9e-124 450.7 345 64.3
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 9.4e-124 448.4 479 48.9
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.8e-122 444.1 469 49.9
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.0e-117 428.3 494 47.4
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 7.2e-116 422.2 264 76.9
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 2.0e-113 414.1 245 87.8
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.6e-113 413.7 363 54.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.9e-112 409.5 474 45.1
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 8.3e-104 382.1 257 71.2
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 5.0e-93 346.3 659 33.8
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 8.6e-93 345.5 304 54.6
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.5e-92 344.0 342 53.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.8e-91 340.5 519 40.5
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.4e-87 328.2 293 54.3
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.8e-83 313.9 387 45.0
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.6e-75 288.1 197 66.5
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.6e-67 260.4 479 34.4
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.4e-66 258.5 163 76.7
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 7.1e-55 219.5 133 77.4
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.0e-50 203.8 195 48.7
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 3.7e-43 180.6 232 49.1
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 8.2e-43 179.5 159 64.2
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.0e-40 172.6 249 42.2
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.5e-36 158.7 228 42.5
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.2e-35 154.8 125 61.6
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.3e-34 150.2 125 59.2
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.6e-33 147.9 123 57.7
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.1e-30 136.7 116 58.6
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.6e-20 104.8 127 49.6
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 3.5e-17 94.4 87 55.2
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.0e-16 90.5 115 44.3
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 7.0e-10 70.1 139 35.3
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 9.1e-10 69.7 73 53.4
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 9.1e-10 69.7 73 53.4
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 1.5e-07 62.4 54 64.8


User provided reference genes

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