Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 1.8e-44 182.2 90 100.0
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 3.0e-31 138.3 101 73.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 6.4e-26 120.6 101 66.3
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 4.6e-16 87.8 70 65.7
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 4.7e-13 77.8 75 53.3
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 4.7e-13 77.8 71 59.2
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 6.2e-13 77.4 75 53.3
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.2e-11 73.2 75 54.7
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 3.4e-11 71.6 97 42.3
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 4.4e-11 71.2 98 41.8
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 4.4e-11 71.2 68 57.4
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 5.8e-11 70.9 87 50.6
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 5.8e-11 70.9 85 48.2
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 9.9e-11 70.1 75 53.3
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.3e-10 69.7 90 47.8
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.3e-10 69.7 90 48.9
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.3e-10 69.7 90 48.9
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.3e-10 69.7 90 48.9
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.3e-10 69.7 85 45.9
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-10 69.3 90 48.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 2.2e-10 68.9 85 47.1
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.9e-10 68.6 75 49.3
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.9e-10 68.6 90 48.9
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 3.8e-10 68.2 75 56.0
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.8e-10 68.2 88 45.5
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-10 68.2 90 48.9
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 3.8e-10 68.2 85 44.7
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 4.9e-10 67.8 103 41.7
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 4.9e-10 67.8 101 41.6
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 4.9e-10 67.8 67 50.7
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 6.4e-10 67.4 75 50.7
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.4e-10 67.4 90 47.8
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 6.4e-10 67.4 101 42.6
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 6.4e-10 67.4 84 50.0
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 8.4e-10 67.0 78 51.3
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 8.4e-10 67.0 84 48.8
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-09 66.6 88 44.3
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.1e-09 66.6 75 49.3
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.1e-09 66.6 75 49.3
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.4e-09 66.2 89 41.6
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.9e-09 65.9 85 47.1
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.9e-09 65.9 66 50.0
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.4e-09 65.5 85 44.7
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 3.2e-09 65.1 85 43.5
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 3.2e-09 65.1 85 43.5
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 5.4e-09 64.3 85 45.9
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 5.4e-09 64.3 83 48.2
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 7.1e-09 63.9 77 53.2
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 7.1e-09 63.9 79 49.4
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 9.3e-09 63.5 76 48.7
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 9.3e-09 63.5 76 50.0
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 9.3e-09 63.5 72 48.6
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.2e-08 63.2 75 48.0
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 1.2e-08 63.2 75 48.0
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.2e-08 63.2 75 44.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.2e-08 63.2 72 48.6
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-08 62.4 75 48.0
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.1e-08 62.4 75 48.0
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 2.1e-08 62.4 72 47.2
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.1e-08 62.4 75 48.0
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 2.7e-08 62.0 95 43.2
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.7e-08 62.0 75 48.0
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 2.7e-08 62.0 85 43.5
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.7e-08 62.0 85 45.9
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 3.5e-08 61.6 88 45.5
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 3.5e-08 61.6 76 43.4
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 4.6e-08 61.2 72 50.0
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 6.0e-08 60.8 87 41.4
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 6.0e-08 60.8 72 47.2
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 7.8e-08 60.5 75 44.0
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 7.8e-08 60.5 70 44.3
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.0e-07 60.1 76 50.0
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.0e-07 60.1 83 41.0
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-07 60.1 75 42.7
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 3.0e-07 58.5 71 47.9
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 5.1e-07 57.8 75 44.0
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 5.1e-07 57.8 75 44.0
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 5.1e-07 57.8 75 44.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 5.1e-07 57.8 80 41.2
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.1e-07 57.8 84 41.7
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 6.6e-07 57.4 90 42.2
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 8.7e-07 57.0 80 40.0
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 8.7e-07 57.0 75 46.7
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 8.7e-07 57.0 78 43.6
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 8.7e-07 57.0 78 43.6
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.1e-06 56.6 76 44.7
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.5e-06 56.2 78 46.2
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.5e-06 56.2 76 47.4
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.5e-06 55.5 73 46.6
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 2.5e-06 55.5 75 42.7
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 2.5e-06 55.5 75 42.7
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 2.5e-06 55.5 75 42.7
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 3.3e-06 55.1 72 45.8
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.3e-06 55.1 82 43.9
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 5.6e-06 54.3 71 43.7
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 5.6e-06 54.3 81 37.0
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 5.6e-06 54.3 70 45.7
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.3e-06 53.9 73 43.8


User provided reference genes

Program Settings