Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 2.1e-169 599.0 305 100.0
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 8.5e-139 497.3 309 81.6
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 6.3e-126 454.5 309 75.4
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 7.7e-124 447.6 308 74.4
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.5e-122 442.6 308 73.7
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.2e-122 442.2 308 73.7
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.0e-120 437.2 308 73.1
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.8e-120 436.4 340 72.9
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.7e-113 411.8 375 60.5
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 9.8e-111 404.1 296 70.6
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 2.2e-110 402.9 297 69.4
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 2.2e-110 402.9 297 69.4
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.3e-107 393.7 296 66.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 3.0e-107 392.5 300 66.7
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 3.9e-107 392.1 294 69.0
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 5.0e-107 391.7 317 65.0
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 8.6e-107 391.0 299 68.2
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 8.6e-107 391.0 297 68.7
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.9e-106 389.8 300 66.7
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.2e-105 387.1 308 65.6
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 8.0e-105 384.4 316 62.7
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 1.8e-104 383.3 316 63.9
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 6.8e-104 381.3 300 64.7
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 1.2e-103 380.6 289 66.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.2e-103 380.6 293 64.8
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.5e-103 380.2 295 66.1
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.0e-103 379.8 300 66.3
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 5.8e-103 378.3 327 59.9
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 5.8e-103 378.3 299 63.9
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.7e-102 376.7 298 64.8
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.7e-102 376.7 223 77.6
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 4.9e-102 375.2 299 65.6
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.9e-102 375.2 262 70.2
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 8.3e-102 374.4 296 64.5
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.4e-101 373.6 214 81.8
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.4e-101 372.9 297 64.6
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 2.4e-101 372.9 261 69.7
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.1e-101 372.1 226 78.8
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.2e-100 370.5 260 68.5
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.6e-100 370.2 301 64.1
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.7e-100 369.4 226 77.9
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 7.8e-100 367.9 225 76.4
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.7e-99 366.7 296 65.2
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 3.0e-99 365.9 295 62.4
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.9e-99 365.5 216 78.2
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 5.0e-99 365.2 217 78.8
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 1.1e-98 364.0 295 62.0
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 1.1e-98 364.0 221 78.7
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 1.5e-98 363.6 295 64.1
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.5e-98 362.8 221 76.5
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 3.3e-98 362.5 241 73.0
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.3e-98 361.3 284 66.2
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 7.3e-98 361.3 215 80.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 9.5e-98 360.9 235 73.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.6e-97 360.1 257 70.0
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.6e-97 360.1 225 77.3
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 3.6e-97 359.0 271 67.5
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 8.1e-97 357.8 297 64.3
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.1e-96 357.5 268 66.4
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 4.0e-96 355.5 224 77.2
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 4.0e-96 355.5 225 76.0
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 4.0e-96 355.5 235 71.1
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 6.8e-96 354.8 212 78.3
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.5e-95 353.6 225 73.3
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 2.6e-95 352.8 244 69.3
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 5.8e-95 351.7 274 62.4
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 7.5e-95 351.3 213 77.9
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.3e-94 350.5 244 72.1
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.3e-94 350.5 294 62.9
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.7e-94 350.1 318 60.1
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 2.9e-94 349.4 214 75.7
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 3.7e-94 349.0 246 69.9
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.1e-93 347.4 222 75.2
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.4e-93 347.1 244 68.9
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 2.4e-93 346.3 211 75.4
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-93 345.9 215 75.8
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 4.1e-93 345.5 213 77.0
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 5.4e-93 345.1 289 62.6
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 5.4e-93 345.1 227 71.8
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 7.1e-93 344.7 261 65.1
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 9.2e-93 344.4 235 70.6
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.6e-92 343.6 247 66.0
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.6e-92 343.6 249 69.9
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 7.8e-92 341.3 216 73.6
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 1.0e-91 340.9 234 68.4
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.3e-91 340.5 275 61.8
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.7e-91 340.1 219 75.3
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 3.0e-91 339.3 233 69.1
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.1e-90 337.4 304 60.2
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.5e-90 337.0 248 66.9
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.9e-90 336.7 264 62.9
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.5e-90 336.3 249 67.5
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 4.3e-90 335.5 214 73.4
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 7.3e-90 334.7 237 69.2
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 9.5e-90 334.3 214 72.4
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.6e-89 333.6 221 72.9
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.1e-88 330.9 214 73.8
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.1e-88 330.9 213 72.3
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.1e-88 330.9 204 75.5
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.4e-88 330.5 249 63.9
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 2.3e-88 329.7 190 77.9
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 4.0e-88 328.9 216 72.2
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 6.8e-88 328.2 217 72.8
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 6.8e-88 328.2 218 69.3
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.2e-87 327.4 265 62.6
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 2.6e-87 326.2 265 62.3
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 2.6e-87 326.2 265 62.3
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 4.4e-87 325.5 287 59.6
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.6e-87 324.7 249 68.3
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.1e-81 306.6 269 61.7
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.2e-81 305.1 179 82.1
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.2e-79 300.8 395 45.3
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 6.4e-78 295.0 257 59.1
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.8e-73 278.9 279 55.9
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 8.1e-73 278.1 261 59.0
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.6e-71 273.1 229 62.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 4.5e-71 272.3 201 68.2
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.5e-68 262.7 267 54.7
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 7.9e-68 261.5 241 53.9
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.4e-62 241.5 237 54.4
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.2e-61 239.6 215 58.1
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.1e-60 236.9 269 49.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 5.1e-59 232.3 162 64.2
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 5.1e-59 232.3 124 79.0
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 2.1e-57 226.9 123 81.3
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 6.9e-56 221.9 131 77.9
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 9.0e-56 221.5 163 68.7
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.0e-54 218.0 123 78.9
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 9.7e-50 201.4 186 58.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 2.1e-49 200.3 210 52.4
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 5.1e-43 179.1 154 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.3e-41 174.5 123 60.2
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 9.4e-37 158.3 145 49.0
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.4e-35 154.5 95 72.6
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.0e-31 140.6 84 76.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.9e-27 126.3 133 54.1
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.9e-27 126.3 145 55.9
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 2.3e-19 100.5 150 48.7
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 3.6e-12 76.6 70 67.1
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.1e-08 63.5 32 78.1
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 7.7e-07 58.9 72 41.7


User provided reference genes

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