Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 8.2e-247 856.7 451 100.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 4.8e-207 724.5 457 81.6
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.6e-186 656.4 454 74.4
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.0e-185 651.7 455 74.1
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.9e-183 645.6 454 74.4
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-182 643.3 455 73.0
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 2.3e-172 609.4 459 69.9
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.6e-172 607.8 451 71.6
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.2e-168 597.0 454 66.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 6.0e-165 584.7 451 67.2
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 2.8e-162 575.9 457 66.1
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 2.8e-162 575.9 445 67.6
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 1.8e-161 573.2 460 66.3
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 3.1e-161 572.4 460 66.3
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 4.0e-161 572.0 466 67.2
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 5.8e-160 568.2 466 66.7
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.3e-159 567.0 449 65.3
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 1.1e-158 563.9 459 64.9
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.1e-158 563.9 426 66.9
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 2.3e-156 556.2 457 63.7
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 2.5e-155 552.7 444 64.6
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.1e-154 549.7 445 64.7
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 2.8e-154 549.3 457 64.1
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 2.8e-154 549.3 454 62.3
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 4.8e-154 548.5 437 65.7
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.4e-153 547.0 454 64.1
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-152 543.9 454 65.9
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.5e-152 543.5 454 66.3
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 2.2e-151 539.7 390 69.0
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 3.8e-151 538.9 453 61.1
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 3.2e-150 535.8 430 68.1
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.8e-148 530.0 453 61.1
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 2.3e-148 529.6 327 80.1
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 6.7e-148 528.1 443 62.1
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 8.7e-148 527.7 414 65.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.9e-147 526.6 450 61.3
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.9e-147 526.6 445 61.8
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 9.6e-147 524.2 461 61.4
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 8.1e-146 521.2 457 60.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 9.0e-145 517.7 456 59.9
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.2e-144 517.3 462 60.2
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 4.9e-143 511.9 388 66.0
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 6.4e-143 511.5 456 59.6
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 4.6e-141 505.4 421 62.2
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 9.0e-137 491.1 464 56.2
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.2e-136 490.7 405 61.0
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 7.6e-136 488.0 388 62.1
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 2.2e-135 486.5 458 57.0
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.9e-134 483.4 449 57.2
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 3.2e-134 482.6 460 59.3
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.7e-133 479.6 384 63.3
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.5e-133 479.2 458 57.0
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 4.6e-133 478.8 454 57.5
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 6.0e-133 478.4 446 60.5
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.3e-132 477.2 438 58.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.8e-132 476.9 456 57.0
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.1e-131 474.2 457 56.2
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 3.3e-131 472.6 462 55.2
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 5.7e-131 471.9 462 56.1
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.3e-130 470.7 458 55.7
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.6e-130 470.3 458 55.7
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 2.2e-130 469.9 469 55.0
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.8e-130 469.5 458 56.1
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.1e-129 467.6 458 55.7
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.1e-129 467.6 458 55.7
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.5e-128 463.8 462 55.0
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.6e-128 463.0 454 56.4
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 5.9e-128 461.8 455 55.8
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.0e-127 461.1 453 54.7
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 2.2e-127 459.9 451 55.4
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 3.8e-127 459.1 460 54.1
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.5e-126 456.4 439 56.3
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.5e-126 456.4 469 53.7
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 5.5e-126 455.3 446 55.2
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 5.5e-126 455.3 464 54.7
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 5.5e-126 455.3 468 54.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.7e-125 453.0 464 53.4
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 3.9e-124 449.1 450 55.8
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 3.9e-124 449.1 454 54.2
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 3.3e-123 446.0 459 55.1
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 5.7e-123 445.3 390 59.0
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.3e-122 444.1 464 54.5
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.8e-122 443.0 456 55.7
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.1e-121 441.0 394 59.1
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.4e-121 440.7 466 53.6
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 4.1e-121 439.1 392 57.4
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 6.9e-121 438.3 457 53.6
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 2.9e-119 433.0 456 55.3
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 2.9e-119 433.0 456 55.3
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 6.5e-119 431.8 454 54.4
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 6.5e-119 431.8 464 53.2
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 3.2e-118 429.5 342 61.1
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 8.8e-116 421.4 440 56.1
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 7.4e-115 418.3 418 51.9
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 2.8e-114 416.4 227 93.8
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 3.5e-112 409.5 378 57.1
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.3e-111 407.5 464 51.1
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.5e-111 405.2 428 51.6
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.5e-110 403.3 457 47.9
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 2.7e-109 399.8 346 62.1
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.3e-108 396.7 412 53.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.3e-103 380.9 343 56.6
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 2.5e-102 376.7 443 48.3
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.3e-98 362.1 363 51.2
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 8.3e-98 361.7 335 60.0
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.8e-95 352.8 334 59.3
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 3.4e-91 339.7 456 46.1
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 2.8e-90 336.7 253 66.8
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 6.3e-90 335.5 368 55.2
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 2.3e-79 300.4 413 43.1
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.9e-79 300.1 346 50.0
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 7.0e-73 278.9 402 41.8
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 4.6e-72 276.2 390 42.8
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.2e-69 268.1 461 44.0
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 2.3e-68 263.8 298 54.0
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 3.3e-62 243.4 228 60.1
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.1e-60 238.4 243 53.5
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.2e-53 214.9 393 35.4
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 6.2e-53 212.6 396 37.4
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 6.8e-52 209.1 391 35.5
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 5.6e-46 189.5 402 33.3
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.4e-28 131.7 108 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.9e-22 111.3 197 38.6
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 2.1e-21 107.8 213 37.1
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.3e-18 98.6 170 36.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.6e-16 91.7 84 54.8
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.5e-16 90.5 189 34.4
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.3e-14 83.6 146 34.9
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 5.7e-14 83.2 384 23.4
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 1.5e-11 75.1 411 23.1
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 6.7e-07 59.7 84 42.9


User provided reference genes

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