Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1235100 Malus domestica HOM05D002529 ORTHO05D002664 5.0e-91 337.8 178 100.0
MD04G1217800 Malus domestica HOM05D002529 ORTHO05D002664 1.2e-36 157.1 107 85.0
Prupe.6G337800 Prunus persica HOM05D002529 ORTHO05D002664 3.9e-27 125.6 112 64.3
MD03G1029600 Malus domestica HOM05D002529 ORTHO05D002664 1.1e-24 117.5 113 60.2
Prupe.6G025700 Prunus persica HOM05D002529 ORTHO05D002664 7.2e-21 104.8 113 57.5
RcHm_v2.0_Chr1g0334081 Rosa chinensis HOM05D002529 ORTHO05D002664 1.7e-17 93.6 112 53.6
Dinv05119 Davidia involucrata HOM05D002529 ORTHO05D002664 1.8e-16 90.1 125 50.4
FAN13G2107 Fragaria x ananassa HOM05D002529 ORTHO05D002664 4.1e-16 89.0 112 50.9
FAN08G0687 Fragaria x ananassa HOM05D002529 ORTHO05D002664 5.3e-16 88.6 112 54.5
RcHm_v2.0_Chr5g0076411 Rosa chinensis HOM05D002529 ORTHO05D002664 1.2e-15 87.4 112 52.7
Dinv02597 Davidia involucrata HOM05D002529 ORTHO05D002664 4.5e-15 85.5 112 47.3
Cfa007075 Carpinus fangiana HOM05D001516 ORTHO05D001357 5.9e-15 85.1 102 48.0
Dinv02599 Davidia involucrata HOM05D002529 ORTHO05D002664 5.9e-15 85.1 115 44.3
QL08p059718 Quercus lobata HOM05D002529 ORTHO05D002664 1.3e-14 84.0 115 45.2
Duzib128G1976 Durio zibethinus HOM05D002529 ORTHO05D002664 2.2e-14 83.2 107 43.9
Actinidia33839 Actinidia chinensis HOM05D002529 ORTHO05D002664 8.5e-14 81.3 107 41.1
Gohir.D11G313300 Gossypium hirsutum HOM05D002529 ORTHO05D002664 1.4e-13 80.5 109 50.5
Gorai.007G344500 Gossypium raimondii HOM05D002529 ORTHO05D002664 1.4e-13 80.5 109 51.4
Gohir.A11G298500 Gossypium hirsutum HOM05D002529 ORTHO05D002664 1.9e-13 80.1 109 50.5
Thecc.05G290400 Theobroma cacao HOM05D002529 ORTHO05D002664 1.9e-13 80.1 111 50.5
FvH4_5g30310 Fragaria vesca HOM05D002529 ORTHO05D002664 2.5e-13 79.7 112 52.7
FAN18G2811 Fragaria x ananassa HOM05D002529 ORTHO05D002664 2.5e-13 79.7 112 52.7
MD11G1033400 Malus domestica HOM05D002529 ORTHO05D002664 7.2e-13 78.2 97 52.6
RcHm_v2.0_Chr2g0125761 Rosa chinensis HOM05D002529 ORTHO05D002664 1.6e-12 77.0 107 48.6
GSVIVG01021882001 Vitis vinifera HOM05D002529 ORTHO05D002664 2.1e-12 76.6 117 53.8
CSS0013639 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 4.7e-12 75.5 108 48.1
Lalb_Chr04g0264001 Lupinus albus HOM05D002529 ORTHO05D002664 4.7e-12 75.5 113 45.1
Potri.013G035000 Populus trichocarpa HOM05D002529 ORTHO05D002664 4.7e-12 75.5 109 45.9
Potri.005G047901 Populus trichocarpa HOM05D002529 ORTHO05D002664 8.0e-12 74.7 109 41.3
Nitab4.5_0004903g0030 Nicotiana tabacum HOM05D002529 ORTHO05D002664 2.3e-11 73.2 108 39.8
Cc06_g23700 Coffea canephora HOM05D002529 ORTHO05D002664 3.0e-11 72.8 111 46.8
Rhsim05G0150200 Rhododendron simsii HOM05D002529 ORTHO05D002664 3.0e-11 72.8 107 41.1
Glyma.19G009300 Glycine max HOM05D002529 ORTHO05D002664 5.2e-11 72.0 111 36.9
Glyma.13G169100 Glycine max HOM05D002529 ORTHO05D002664 6.7e-11 71.6 111 36.9
Lj4g0005583 Lotus japonicus HOM05D002529 ORTHO05D002664 6.7e-11 71.6 112 44.6
Eucgr.H04397 Eucalyptus grandis HOM05D002529 ORTHO05D002664 8.8e-11 71.2 108 50.9
Hma1.2p1_0083F.1_g042670 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 8.8e-11 71.2 123 46.3
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 2.0e-10 70.1 109 45.0
CiPaw.07G007900 Carya illinoinensis HOM05D002529 ORTHO05D002664 2.6e-10 69.7 111 38.7
CiPaw.08G178400 Carya illinoinensis HOM05D002529 ORTHO05D002664 3.3e-10 69.3 110 40.0
Nitab4.5_0002687g0060 Nicotiana tabacum HOM05D002529 ORTHO05D002664 3.3e-10 69.3 110 45.5
Oeu006310.1 Olea europaea HOM05D002529 ORTHO05D002664 3.3e-10 69.3 108 45.4
vmacro19828 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 3.3e-10 69.3 113 46.0
Ca_23953_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 4.4e-10 68.9 113 42.5
Ca_23959_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 4.4e-10 68.9 113 42.5
Nitab4.5_0003586g0050 Nicotiana tabacum HOM05D002529 ORTHO05D002664 5.7e-10 68.6 108 38.0
CANSAT54G0996 Cannabis sativa HOM05D002529 ORTHO05D002664 7.4e-10 68.2 116 47.4
PGSC0003DMG400027508 Solanum tuberosum HOM05D002529 ORTHO05D002664 7.4e-10 68.2 111 37.8
CAN.G134.40 Capsicum annuum HOM05D002529 ORTHO05D002664 1.7e-09 67.0 111 36.9
Psat2g156040 Pisum sativum HOM05D002529 ORTHO05D002664 1.7e-09 67.0 117 45.3
Nn5g28120 Nelumbo nucifera HOM05D002529 ORTHO05D002664 2.2e-09 66.6 105 37.1
MSTRG.5850 Avicennia marina HOM05D002529 ORTHO05D002664 3.7e-09 65.9 110 35.5
Lj1g0004297 Lotus japonicus HOM05D002529 ORTHO05D002664 4.8e-09 65.5 110 36.4
Cpa.g.sc114.63 Carica papaya HOM05D002529 ORTHO05D002664 6.3e-09 65.1 116 46.6
Glyma.18G147100 Glycine max HOM05D002529 ORTHO05D002664 8.2e-09 64.7 113 36.3
Medtr8g043450 Medicago truncatula HOM05D002529 ORTHO05D002664 1.1e-08 64.3 114 43.9
Solyc01g096760.3 Solanum lycopersicum HOM05D002529 ORTHO05D002664 1.4e-08 63.9 111 36.0
Sopen01g040470 Solanum pennellii HOM05D002529 ORTHO05D002664 1.4e-08 63.9 111 36.0
Oeu021565.1 Olea europaea HOM05D002529 ORTHO05D002664 1.8e-08 63.5 108 44.4
Manes.08G120700 Manihot esculenta HOM05D002529 ORTHO05D002664 4.1e-08 62.4 109 48.6
Oeu026809.1 Olea europaea HOM05D002529 ORTHO05D002664 4.1e-08 62.4 108 48.1
Sed0025735 Sechium edule HOM05D002529 ORTHO05D002664 4.1e-08 62.4 111 45.0
Lj1g0003097 Lotus japonicus HOM05D002529 ORTHO05D002664 1.2e-07 60.8 100 43.0
DCAR_018312 Daucus carota HOM05D002529 ORTHO05D002664 1.6e-07 60.5 107 38.3
MD11G1033000 Malus domestica HOM05D002529 ORTHO05D002664 2.0e-07 60.1 38 68.4
Nn1g02343 Nelumbo nucifera HOM05D002529 ORTHO05D002664 2.6e-07 59.7 104 34.6
CsaV3_3G047670 Cucumis sativus L. HOM05D002529 ORTHO05D002664 3.5e-07 59.3 109 43.1
Peaxi162Scf00220g00008 Petunia axillaris HOM05D002529 ORTHO05D002664 4.5e-07 58.9 107 37.4
Lj7A478T87 Lonicera japonica HOM05D002529 ORTHO05D002664 5.9e-07 58.5 104 36.5
Peaxi162Scf00220g00009 Petunia axillaris HOM05D002529 ORTHO05D002664 5.9e-07 58.5 111 34.2
Ciclev10002511m.g Citrus clementina HOM05D002529 ORTHO05D002664 7.7e-07 58.2 107 42.1
Atru.chr2.663 Acer truncatum HOM05D002529 ORTHO05D002664 1.0e-06 57.8 102 46.1
MELO3C003557.2 Cucumis melo HOM05D002529 ORTHO05D002664 1.7e-06 57.0 109 42.2
CARHR185680 Cardamine hirsuta HOM05D002529 ORTHO05D002664 2.2e-06 56.6 112 40.2
TAR636G3415 Trochodendron aralioides HOM05D002529 ORTHO05D002664 2.2e-06 56.6 108 34.3
Hund06996 Selenicereus undatus HOM05D002529 ORTHO05D002664 3.8e-06 55.8 114 43.9
TAR374G0044 Trochodendron aralioides HOM05D002529 ORTHO05D002664 3.8e-06 55.8 108 35.2
Migut.L01786 Erythranthe guttata HOM05D002529 ORTHO05D002664 5.0e-06 55.5 114 35.1
SGA_v2.0_scaffold31G12908 Striga asiatica HOM05D002529 ORTHO05D002664 5.0e-06 55.5 122 40.2
Phvul.003G288900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 6.5e-06 55.1 113 38.1
AUR62000960 Chenopodium quinoa HOM05D002529 ORTHO05D002664 8.5e-06 54.7 107 31.8
PSO832G3905 Papaver somniferum HOM05D002529 ORTHO05D002664 8.5e-06 54.7 108 32.4
SalBow5G1920 Salvia bowleyana HOM05D002529 ORTHO05D002664 8.5e-06 54.7 112 36.6
SalBow5G5584 Salvia bowleyana HOM05D002529 ORTHO05D002664 8.5e-06 54.7 112 36.6


User provided reference genes

Program Settings