Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1223500 Malus domestica HOM05D002553 ORTHO05D002767 5.0e-27 123.6 60 100.0
MD04G1209000 Malus domestica HOM05D002553 ORTHO05D002767 9.2e-21 102.8 56 85.7
RcHm_v2.0_Chr3g0454121 Rosa chinensis HOM05D002553 ORTHO05D002767 2.7e-20 101.3 54 88.9
Prupe.6G330000 Prunus persica HOM05D002553 ORTHO05D002767 4.6e-20 100.5 52 92.3
FvH4_6g05350 Fragaria vesca HOM05D002553 ORTHO05D002767 6.0e-20 100.1 56 85.7
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.0e-20 100.1 56 85.7
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.0e-20 100.1 56 85.7
FAN09G0499 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.0e-20 100.1 56 85.7
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.0e-20 100.1 56 85.7
AL6G39600 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 7.8e-20 99.8 54 85.2
CARHR186010 Cardamine hirsuta HOM05D002553 ORTHO05D002767 7.8e-20 99.8 54 85.2
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.0e-19 99.4 54 85.2
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.3e-19 99.0 54 85.2
Carub.0006s2513 Capsella rubella HOM05D002553 ORTHO05D002767 1.7e-19 98.6 54 85.2
PGR083G1620 Punica granatum HOM05D002553 ORTHO05D002767 1.7e-19 98.6 56 83.9
AL3G15610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 2.3e-19 98.2 54 85.2
AT3G05190 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 2.3e-19 98.2 54 85.2
Thhalv10020427m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 2.3e-19 98.2 54 85.2
Lj9C682T7 Lonicera japonica HOM05D002553 ORTHO05D002767 2.3e-19 98.2 56 82.1
SGA_v2.0_scaffold232G43477 Striga asiatica HOM05D002553 ORTHO05D002767 3.0e-19 97.8 56 82.1
SGA_v2.0_scaffold43G16279 Striga asiatica HOM05D002553 ORTHO05D002767 3.0e-19 97.8 54 85.2
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 3.9e-19 97.4 54 83.3
Hund07047 Selenicereus undatus HOM05D002553 ORTHO05D002767 3.9e-19 97.4 52 88.5
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 5.0e-19 97.1 54 83.3
CSS0016581 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.0e-19 97.1 56 82.1
CSS0026671 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.0e-19 97.1 56 82.1
Carub.0003s0444 Capsella rubella HOM05D002553 ORTHO05D002767 5.0e-19 97.1 54 81.5
Aa31LG5G15560 Aethionema arabicum HOM05D002553 ORTHO05D002767 6.6e-19 96.7 54 83.3
CANSAT54G1986 Cannabis sativa HOM05D002553 ORTHO05D002767 6.6e-19 96.7 56 80.4
Cpa.g.sc48.14 Carica papaya HOM05D002553 ORTHO05D002767 6.6e-19 96.7 56 82.1
Sp3g04040 Schrenkiella parvula HOM05D002553 ORTHO05D002767 6.6e-19 96.7 54 83.3
BcaNung02463 Brassica carinata HOM05D002553 ORTHO05D002767 8.6e-19 96.3 54 83.3
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 8.6e-19 96.3 54 83.3
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 8.6e-19 96.3 54 83.3
Sabra05G0037500 Salix brachista HOM05D002553 ORTHO05D002767 1.1e-18 95.9 56 80.4
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 1.1e-18 95.9 55 78.2
THA.LOC104802808 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.1e-18 95.9 56 78.6
Glyma.03G240100 Glycine max HOM05D002553 ORTHO05D002767 1.5e-18 95.5 56 78.6
Gohir.D13G110400 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.5e-18 95.5 56 82.1
Gorai.013G123700 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.5e-18 95.5 56 82.1
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 1.5e-18 95.5 54 79.6
Thecc.05G308000 Theobroma cacao HOM05D002553 ORTHO05D002767 1.5e-18 95.5 56 82.1
Potri.005G039100 Populus trichocarpa HOM05D002553 ORTHO05D002767 1.9e-18 95.1 56 80.4
A09p05260 Brassica napus HOM05D002553 ORTHO05D002767 2.5e-18 94.7 54 79.6
BraA09t36165Z Brassica rapa HOM05D002553 ORTHO05D002767 2.5e-18 94.7 54 79.6
Eucgr.B02001 Eucalyptus grandis HOM05D002553 ORTHO05D002767 2.5e-18 94.7 54 83.3
Cc02_g32710 Coffea canephora HOM05D002553 ORTHO05D002767 3.3e-18 94.4 56 78.6
BcaNung04368 Brassica carinata HOM05D002553 ORTHO05D002767 4.3e-18 94.0 54 79.6
Ah.06g190110 Amaranthus hybridus HOM05D002553 ORTHO05D002767 7.3e-18 93.2 54 79.6
C09p05740 Brassica napus HOM05D002553 ORTHO05D002767 7.3e-18 93.2 54 77.8
BolC9t53501H Brassica oleracea HOM05D002553 ORTHO05D002767 7.3e-18 93.2 54 77.8
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus HOM05D002553 ORTHO05D002767 9.5e-18 92.8 56 80.4
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 9.5e-18 92.8 56 76.8
Nn4g26152 Nelumbo nucifera HOM05D002553 ORTHO05D002767 9.5e-18 92.8 52 82.7
CiPaw.07G014800 Carya illinoinensis HOM05D002553 ORTHO05D002767 1.2e-17 92.4 55 76.4
Oeu012095.1 Olea europaea HOM05D002553 ORTHO05D002767 1.2e-17 92.4 54 72.2
Sopen01g042240 Solanum pennellii HOM05D002553 ORTHO05D002767 1.2e-17 92.4 56 76.8
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 1.6e-17 92.0 52 80.8
COL.COLO4_13515 Corchorus olitorius HOM05D002553 ORTHO05D002767 1.6e-17 92.0 54 81.5
MELO3C004297.2 Cucumis melo HOM05D002553 ORTHO05D002767 1.6e-17 92.0 52 80.8
CsaV3_2G004990 Cucumis sativus L. HOM05D002553 ORTHO05D002767 1.6e-17 92.0 52 80.8
Nitab4.5_0004271g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.6e-17 92.0 56 76.8
VMungo0540G1597 Vigna mungo HOM05D002553 ORTHO05D002767 1.6e-17 92.0 56 73.2
CARHR079530 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.1e-17 91.7 53 81.1
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 2.1e-17 91.7 56 82.1
Lj5g0009152 Lotus japonicus HOM05D002553 ORTHO05D002767 2.1e-17 91.7 56 73.2
Peaxi162Scf00434g00216 Petunia axillaris HOM05D002553 ORTHO05D002767 2.1e-17 91.7 56 76.8
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea HOM05D002553 ORTHO05D002767 2.8e-17 91.3 52 75.0
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea HOM05D002553 ORTHO05D002767 2.8e-17 91.3 52 75.0
Psat6g149240 Pisum sativum HOM05D002553 ORTHO05D002767 2.8e-17 91.3 56 73.2
TPR.G3095 Trifolium pratense HOM05D002553 ORTHO05D002767 2.8e-17 91.3 56 73.2
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 2.8e-17 91.3 51 84.3
TWI12G0069 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 3.6e-17 90.9 56 75.0
Migut.B01190 Erythranthe guttata HOM05D002553 ORTHO05D002767 6.2e-17 90.1 53 79.2
Gohir.A13G107200 Gossypium hirsutum HOM05D002553 ORTHO05D002767 6.2e-17 90.1 51 84.3
Phvul.006G093911 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 6.2e-17 90.1 56 73.2
Nitab4.5_0006809g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 8.1e-17 89.7 56 75.0
Oeu064147.1 Olea europaea HOM05D002553 ORTHO05D002767 8.1e-17 89.7 52 80.8
Sc09g0003340 Simmondsia chinensis HOM05D002553 ORTHO05D002767 8.1e-17 89.7 52 80.8
DCAR_003314 Daucus carota HOM05D002553 ORTHO05D002767 1.1e-16 89.4 56 75.0
QL03p004498 Quercus lobata HOM05D002553 ORTHO05D002767 1.1e-16 89.4 55 74.5
BraSC132t45517Z Brassica rapa HOM05D002553 ORTHO05D002767 2.3e-16 88.2 52 80.8
CAN.G1134.23 Capsicum annuum HOM05D002553 ORTHO05D002767 2.3e-16 88.2 56 73.2
Ca_10093_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 2.3e-16 88.2 49 77.6
ECA247G0575 Erigeron canadensis HOM05D002553 ORTHO05D002767 2.3e-16 88.2 56 73.2
TAR362G0623 Trochodendron aralioides HOM05D002553 ORTHO05D002767 2.3e-16 88.2 56 73.2
Zm00001eb017520 Zea mays HOM05D002553 ORTHO05D002767 2.3e-16 88.2 56 71.4
FAN14G5684 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.1e-16 87.8 47 89.4
Atru.chr2.475 Acer truncatum HOM05D002553 ORTHO05D002767 4.0e-16 87.4 50 82.0
MSTRG.5079 Avicennia marina HOM05D002553 ORTHO05D002767 4.0e-16 87.4 56 69.6
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.0e-16 87.4 52 75.0
TPR.G2739 Trifolium pratense HOM05D002553 ORTHO05D002767 4.0e-16 87.4 52 73.1
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 5.2e-16 87.0 52 75.0
Medtr1g082470 Medicago truncatula HOM05D002553 ORTHO05D002767 5.2e-16 87.0 49 79.6
Lalb_Chr18g0045531 Lupinus albus HOM05D002553 ORTHO05D002767 6.8e-16 86.7 53 75.5
Glyma.10G156701 Glycine max HOM05D002553 ORTHO05D002767 8.9e-16 86.3 56 69.6
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 1.2e-15 85.9 56 69.6
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 1.2e-15 85.9 56 73.2
Migut.N01859 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.5e-15 85.5 54 72.2
Medtr1g083370 Medicago truncatula HOM05D002553 ORTHO05D002767 1.5e-15 85.5 56 69.6
PSO210G1325 Papaver somniferum HOM05D002553 ORTHO05D002767 1.5e-15 85.5 56 69.6
Aqoxy5G00545 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 3.4e-15 84.3 56 69.6
MSTRG.16977 Avicennia marina HOM05D002553 ORTHO05D002767 3.4e-15 84.3 53 69.8
Lsat_1_v5_gn_1_25020 Lactuca sativa HOM05D002553 ORTHO05D002767 2.9e-14 81.3 54 68.5
ATR0626G263 Amborella trichopoda HOM05D002553 ORTHO05D002767 4.9e-14 80.5 50 74.0
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 1.9e-13 78.6 46 78.3
Pp3c16_17790 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.2e-12 75.9 54 59.3
Pp3c6_5420 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.2e-12 75.9 50 66.0
Mapoly0006s0260 Marchantia polymorpha HOM05D002553 ORTHO05D002767 2.3e-11 71.6 50 64.0
TAR636G3134 Trochodendron aralioides HOM05D002553 ORTHO05D002767 2.3e-11 71.6 49 63.3
Oeu013074.1 Olea europaea HOM05D002553 ORTHO05D002767 3.9e-11 70.9 43 74.4
BolC1t05707H Brassica oleracea HOM05D002553 ORTHO05D002767 5.1e-11 70.5 42 76.2
SMO356G0084 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 3.6e-09 64.3 50 58.0
Rhsim05G0144300 Rhododendron simsii HOM05D002553 ORTHO05D002767 6.2e-09 63.5 43 69.8
CBR_g26135 Chara braunii HOM05D002553 ORTHO05D002767 1.1e-08 62.8 50 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis HOM05D002553 ORTHO05D002767 2.3e-08 61.6 49 57.1
Haze_04233 Corylus avellana HOM05D002553 ORTHO05D002767 6.8e-08 60.1 42 66.7
HPP92_001339 Vanilla planifolia HOM05D002553 ORTHO05D002767 3.7e-06 54.3 37 67.6


User provided reference genes

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