Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 8.0e-91 337.0 166 100.0
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 1.1e-66 256.9 144 88.9
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 1.2e-62 243.4 144 83.3
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 1.5e-49 199.9 145 71.7
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.4e-49 198.7 141 73.8
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.4e-49 198.7 141 73.8
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 3.4e-49 198.7 145 73.1
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 9.9e-49 197.2 145 71.0
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.8e-48 195.3 141 72.3
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.4e-48 194.1 141 71.6
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.3e-45 186.0 136 68.4
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 3.0e-45 185.7 136 68.4
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 1.1e-44 183.7 136 66.2
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 5.6e-44 181.4 136 64.7
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 5.6e-44 181.4 136 66.2
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 9.6e-44 180.6 136 64.0
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 2.1e-43 179.5 136 67.6
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.8e-42 176.4 137 62.8
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 3.1e-42 175.6 135 64.4
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 6.9e-42 174.5 138 64.5
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 9.0e-42 174.1 136 63.2
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 9.0e-42 174.1 145 63.4
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 1.5e-41 173.3 143 60.8
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.8e-41 171.4 137 62.0
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 7.6e-41 171.0 136 62.5
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 1.3e-40 170.2 137 60.6
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.7e-40 169.9 136 61.8
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.7e-40 169.9 144 63.9
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 2.2e-40 169.5 142 61.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 2.2e-40 169.5 142 60.6
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 2.2e-40 169.5 136 61.8
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.1e-39 167.2 149 59.1
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 9.3e-39 164.1 133 58.6
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.2e-38 163.7 136 61.8
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.6e-38 163.3 142 62.0
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 2.7e-38 162.5 133 57.1
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 6.0e-38 161.4 136 60.3
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 7.9e-38 161.0 137 59.9
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.8e-37 159.8 136 59.6
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 6.7e-37 157.9 118 70.3
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 2.5e-36 156.0 136 55.1
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 9.6e-36 154.1 136 54.4
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 1.3e-35 153.7 136 55.1
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 1.6e-35 153.3 136 53.7
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 3.7e-35 152.1 136 58.8
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 8.1e-35 151.0 133 56.4
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 8.1e-35 151.0 133 54.9
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.1e-34 150.6 133 56.4
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 1.4e-34 150.2 133 55.6
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 2.4e-34 149.4 135 55.6
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 3.1e-34 149.1 133 55.6
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 4.0e-34 148.7 140 58.6
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 6.9e-34 147.9 142 55.6
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 9.0e-34 147.5 143 55.2
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.2e-33 147.1 136 53.7
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.5e-33 146.7 146 54.1
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.0e-33 146.4 133 56.4
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-33 146.4 143 54.5
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 2.6e-33 146.0 144 56.2
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 3.4e-33 145.6 136 55.1
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 5.8e-33 144.8 140 57.9
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 1.3e-32 143.7 114 64.9
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.7e-32 143.3 133 54.9
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 2.2e-32 142.9 140 56.4
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 2.2e-32 142.9 133 55.6
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 3.8e-32 142.1 133 55.6
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.5e-31 139.4 133 53.4
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 4.2e-31 138.7 139 53.2
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 5.5e-31 138.3 133 54.9
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 5.5e-31 138.3 137 54.0
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 7.1e-31 137.9 139 53.2
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 1.2e-30 137.1 133 53.4
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 2.7e-30 136.0 136 51.5
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 2.7e-30 136.0 143 52.4
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 6.0e-30 134.8 150 50.0
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.3e-29 133.7 136 49.3
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 3.0e-29 132.5 138 52.2
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 5.1e-29 131.7 140 51.4
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 5.1e-29 131.7 140 50.7
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 5.1e-29 131.7 138 52.2
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 5.1e-29 131.7 138 52.2
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 5.1e-29 131.7 138 53.6
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 8.7e-29 131.0 138 53.6
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 8.7e-29 131.0 138 53.6
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 3.3e-28 129.0 127 54.3
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 5.7e-28 128.3 138 52.9
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 2.1e-27 126.3 133 48.9
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 6.2e-27 124.8 141 48.9
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 8.2e-27 124.4 132 50.8
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 3.1e-26 122.5 134 49.3
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 9.0e-26 120.9 131 45.8
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 2.6e-25 119.4 142 48.6
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 3.4e-25 119.0 165 44.8
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 4.5e-25 118.6 166 44.6
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 5.8e-25 118.2 106 57.5
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 7.6e-25 117.9 133 48.1
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-24 117.5 166 44.6
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 1.0e-24 117.5 156 42.3
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.3e-24 117.1 108 61.1
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 2.9e-24 115.9 134 46.3
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 3.8e-24 115.5 135 48.9
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 5.0e-24 115.2 148 46.6
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 6.5e-24 114.8 99 58.6
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 1.9e-23 113.2 123 50.4
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.6e-22 110.2 112 50.0
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 2.1e-22 109.8 146 41.8
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.3e-21 107.1 136 43.4
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 6.9e-18 94.7 94 52.1
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 7.7e-17 91.3 84 53.6
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.1e-15 87.4 126 40.5
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 5.5e-15 85.1 101 48.5
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 5.5e-15 85.1 99 48.5
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.2e-14 84.0 116 40.5
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.0e-13 80.9 100 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 3.9e-13 79.0 94 40.4
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.5e-12 77.0 127 40.9
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 5.7e-12 75.1 43 79.1
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.8e-10 70.1 107 35.5
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 3.4e-09 65.9 67 52.2
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 5.9e-09 65.1 47 59.6
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 3.8e-08 62.4 102 34.3
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 1.1e-07 60.8 98 35.7
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 4.7e-06 55.5 113 29.2


User provided reference genes

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