Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 8.7e-148 526.9 266 100.0
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 1.6e-128 463.0 266 88.3
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 6.3e-114 414.5 271 80.1
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.4e-107 391.7 269 75.8
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 2.0e-104 382.9 277 72.2
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.0e-103 378.3 267 73.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 2.3e-100 369.4 267 71.9
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.7e-99 364.8 267 71.5
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.0e-96 356.3 229 79.0
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.5e-96 355.5 288 66.3
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 5.0e-95 351.7 269 65.1
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.5e-94 350.1 263 66.2
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 2.5e-94 349.4 262 67.2
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 4.3e-94 348.6 266 66.9
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.2e-93 347.1 269 66.5
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 2.8e-93 345.9 263 67.3
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 2.8e-93 345.9 269 64.3
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 6.2e-93 344.7 262 66.0
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 8.0e-93 344.4 265 66.0
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 1.8e-92 343.2 265 64.2
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.1e-92 342.4 263 65.4
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.1e-92 342.4 263 65.4
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.1e-92 342.4 263 65.4
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 2.6e-91 339.3 259 64.5
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 4.4e-91 338.6 262 65.3
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 5.8e-91 338.2 228 71.9
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 9.8e-91 337.4 269 63.2
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 2.9e-90 335.9 264 62.5
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 2.9e-90 335.9 265 65.3
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 8.3e-90 334.3 267 61.8
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 8.3e-90 334.3 272 63.6
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 8.3e-90 334.3 269 62.8
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.4e-89 333.6 258 64.3
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 2.4e-89 332.8 264 64.0
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 2.4e-89 332.8 264 64.0
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 2.4e-89 332.8 264 64.0
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 2.4e-89 332.8 271 62.7
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 3.2e-89 332.4 238 67.6
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 3.2e-89 332.4 238 67.6
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.2e-89 332.4 271 62.7
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 5.4e-89 331.6 263 60.8
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 7.0e-89 331.3 283 60.8
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.0e-87 327.4 267 61.8
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.3e-87 327.0 263 61.6
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 1.7e-87 326.6 267 61.8
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.7e-87 326.6 271 60.9
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 3.0e-87 325.9 277 60.6
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 3.0e-87 325.9 229 68.6
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 8.6e-87 324.3 263 61.2
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 8.6e-87 324.3 260 61.2
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.1e-86 323.9 274 61.7
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.1e-86 323.9 261 62.1
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.9e-86 323.2 224 68.8
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.9e-86 323.2 238 67.2
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 2.5e-86 322.8 264 62.5
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 3.3e-86 322.4 259 63.3
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 5.6e-86 321.6 256 64.1
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 5.6e-86 321.6 263 62.0
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 7.3e-86 321.2 253 63.2
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 7.3e-86 321.2 266 60.5
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 9.5e-86 320.9 269 59.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.2e-85 320.5 219 69.4
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.6e-85 320.1 224 70.1
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.8e-85 319.3 240 65.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 6.2e-85 318.2 267 59.2
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 8.1e-85 317.8 261 62.8
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 2.3e-84 316.2 258 63.2
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 5.2e-84 315.1 238 65.5
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 8.9e-84 314.3 261 62.1
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.2e-83 313.9 226 68.6
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.0e-83 313.2 278 59.4
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.7e-82 310.1 224 66.1
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.2e-82 309.7 220 69.5
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 3.7e-82 308.9 265 59.6
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 8.3e-82 307.8 224 65.6
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.4e-81 307.0 228 68.0
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.4e-81 307.0 225 67.1
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 4.1e-81 305.4 257 60.3
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 5.4e-81 305.1 228 67.5
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.4e-81 305.1 226 67.3
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.2e-80 303.9 220 67.3
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 1.6e-80 303.5 219 67.1
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.1e-80 303.1 271 58.3
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.1e-80 303.1 271 58.3
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.7e-80 302.8 224 64.3
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 6.0e-80 301.6 259 61.0
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.0e-79 300.8 223 65.9
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.7e-79 300.1 220 65.9
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.9e-78 296.6 227 64.8
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 7.3e-78 294.7 271 58.3
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.6e-77 292.4 254 58.7
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 3.6e-77 292.4 265 58.9
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.7e-77 292.0 228 62.7
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 4.7e-77 292.0 265 55.5
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.5e-75 287.0 270 54.8
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 8.4e-74 281.2 245 58.0
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 7.1e-73 278.1 318 47.8
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 2.1e-72 276.6 221 62.4
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.3e-71 273.1 224 62.9
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.9e-71 272.3 264 53.0
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 2.8e-69 266.2 475 37.9
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 3.6e-69 265.8 221 57.5
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 4.0e-68 262.3 208 59.6
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.5e-67 260.4 185 65.4
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 7.8e-64 248.1 208 53.8
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 4.2e-57 225.7 208 51.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 7.1e-57 224.9 117 94.9
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 3.9e-55 219.2 212 51.9
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.4e-49 200.7 211 46.4
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 4.2e-49 199.1 162 61.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.3e-47 194.1 164 59.8
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.4e-44 184.1 111 78.4
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.0e-44 182.6 107 78.5
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 8.4e-42 174.9 149 61.7
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 3.2e-41 172.9 125 67.2
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.2e-33 146.4 99 66.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.8e-28 130.6 134 51.5
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 3.4e-27 126.3 117 55.6
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 1.1e-25 121.3 118 55.1
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.4e-25 120.9 262 32.1
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 5.5e-17 92.4 88 54.5
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 1.6e-16 90.9 85 55.3
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 6.1e-16 89.0 67 67.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 7.7e-11 72.0 77 49.4
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 5.0e-10 69.3 102 42.2
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 2.0e-06 57.4 47 55.3


User provided reference genes

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