Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 1.7e-97 359.4 188 100.0
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 5.2e-78 294.7 187 81.3
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 8.3e-68 260.8 183 74.9
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 1.8e-67 259.6 176 74.4
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 9.8e-45 184.1 180 55.6
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 9.8e-45 184.1 180 55.6
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 2.2e-44 183.0 179 55.9
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.7e-44 182.2 180 55.6
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.9e-41 172.2 157 57.3
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 5.0e-41 171.8 167 55.1
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.0e-41 171.8 167 55.1
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 3.1e-38 162.5 191 51.8
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 4.4e-37 158.7 170 50.6
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 1.6e-34 150.2 167 52.1
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 1.3e-33 147.1 167 44.9
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 8.6e-33 144.4 182 45.6
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 1.1e-32 144.1 167 43.7
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 5.6e-32 141.7 174 46.6
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 2.1e-31 139.8 170 42.9
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 6.2e-31 138.3 163 44.2
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 2.4e-30 136.3 183 42.6
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 6.8e-30 134.8 163 43.6
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.0e-29 133.3 147 46.3
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.0e-29 133.3 147 49.7
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 2.6e-29 132.9 147 48.3
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.8e-29 131.7 146 46.6
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 9.9e-29 131.0 146 46.6
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 9.9e-29 131.0 171 43.9
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 1.4e-27 127.1 139 46.0
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.9e-27 126.7 142 45.8
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 1.9e-27 126.7 177 42.9
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 4.1e-27 125.6 130 52.3
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 7.1e-27 124.8 169 44.4
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 2.3e-25 119.8 126 50.8
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 2.5e-24 116.3 173 38.7
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 2.5e-24 116.3 168 44.0
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 3.3e-24 115.9 166 39.2
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.2e-23 114.0 101 56.4
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 1.4e-22 110.5 171 40.4
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 5.2e-22 108.6 141 44.7
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 7.6e-21 104.8 88 60.2
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.8e-20 102.4 135 43.0
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.9e-20 102.1 135 40.7
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.1e-19 100.9 135 42.2
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 1.2e-18 97.4 162 34.6
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 4.6e-18 95.5 150 38.0
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 2.3e-17 93.2 167 36.5
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 1.5e-16 90.5 153 36.6
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.9e-16 90.1 120 40.0
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 4.3e-16 89.0 150 33.3
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 1.6e-15 87.0 165 35.8
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.8e-15 86.3 165 35.8
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 8.1e-15 84.7 166 36.7
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 1.1e-14 84.3 150 33.3
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 1.4e-14 84.0 124 39.5
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 4.0e-14 82.4 161 32.9
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 2.6e-13 79.7 173 30.1
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 4.5e-13 79.0 152 34.2
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 5.8e-13 78.6 114 34.2
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 7.6e-13 78.2 96 44.8
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 9.9e-13 77.8 177 29.9
Migut.G00780 Erythranthe guttata HOM05D009933 ORTHO05D012084 1.3e-12 77.4 165 29.1
Peaxi162Scf01623g00014 Petunia axillaris HOM05D009933 ORTHO05D012084 1.3e-12 77.4 186 30.6
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 2.2e-12 76.6 176 29.0
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.9e-12 76.3 94 47.9
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 6.4e-12 75.1 172 29.7
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 6.4e-12 75.1 165 29.7
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 3.2e-11 72.8 167 26.9
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 4.2e-11 72.4 171 31.0
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 9.3e-11 71.2 135 29.6
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 1.2e-10 70.9 152 29.6
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 2.1e-10 70.1 124 29.0
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 2.7e-10 69.7 156 31.4
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 3.5e-10 69.3 180 25.6
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 4.6e-10 68.9 169 32.0
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 6.0e-10 68.6 144 31.9
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 7.9e-10 68.2 140 30.0
SGA_v2.0_scaffold74G24609 Striga asiatica HOM05D009933 ORTHO05D009712 1.0e-09 67.8 174 29.9
Oeu047690.1 Olea europaea HOM05D004113 ORTHO05D005233 1.3e-09 67.4 140 29.3
Solyc08g016100.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 1.3e-09 67.4 184 27.7
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.3e-09 67.4 167 31.1
Manes.10G035700 Manihot esculenta HOM05D004113 ORTHO05D005233 3.0e-09 66.2 168 28.6
Solyc08g016120.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 3.0e-09 66.2 184 27.7
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 5.1e-09 65.5 170 25.3
Solyc04g015510.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 5.1e-09 65.5 166 28.3
TAR365G0500 Trochodendron aralioides HOM05D001578 ORTHO05D001207 5.1e-09 65.5 155 31.6
Solyc11g005470.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 6.7e-09 65.1 170 26.5
PGSC0003DMG400003969 Solanum tuberosum HOM05D009933 ORTHO05D012084 6.7e-09 65.1 170 27.6
TAR633G1553 Trochodendron aralioides HOM05D012615 ORTHO05D010044 6.7e-09 65.1 173 26.6
AT5G24370 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 8.7e-09 64.7 125 30.4
Manes.10G035200 Manihot esculenta HOM05D004113 ORTHO05D005233 8.7e-09 64.7 164 29.9
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 1.5e-08 63.9 165 27.9
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.9e-08 63.5 170 30.6
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 1.9e-08 63.5 167 29.3
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 3.3e-08 62.8 148 27.0
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 3.3e-08 62.8 148 27.0
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 3.3e-08 62.8 149 29.5
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 4.3e-08 62.4 152 30.3
Manes.10G035400 Manihot esculenta HOM05D004113 ORTHO05D005233 4.3e-08 62.4 162 27.8
Carub.0001s0871 Capsella rubella HOM05D009911 ORTHO05D009712 7.4e-08 61.6 156 28.8
CARHR189050 Cardamine hirsuta HOM05D009945 ORTHO05D012028 7.4e-08 61.6 115 31.3
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 7.4e-08 61.6 165 26.7
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 9.6e-08 61.2 171 27.5
PGSC0003DMG400038811 Solanum tuberosum HOM05D009933 ORTHO05D012084 9.6e-08 61.2 162 28.4
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.3e-07 60.8 171 30.4
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 1.3e-07 60.8 168 26.8
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 1.3e-07 60.8 165 26.7
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 1.6e-07 60.5 180 28.9
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.6e-07 60.5 169 26.6
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 2.1e-07 60.1 171 30.4
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.1e-07 60.1 151 28.5
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 2.1e-07 60.1 139 30.9
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 2.8e-07 59.7 159 26.4
QL06p029175 Quercus lobata HOM05D004113 ORTHO05D005233 2.8e-07 59.7 129 28.7
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 3.7e-07 59.3 171 26.3
Solyc08g016110.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 3.7e-07 59.3 171 25.1
SGA_v2.0_scaffold48G17932 Striga asiatica HOM05D008339 ORTHO05D009712 3.7e-07 59.3 172 27.9
TAR365G1026 Trochodendron aralioides HOM05D001578 ORTHO05D001207 3.7e-07 59.3 140 31.4
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 4.8e-07 58.9 169 29.0
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 4.8e-07 58.9 151 28.5
PGSC0003DMG400003994 Solanum tuberosum HOM05D009933 ORTHO05D012084 4.8e-07 58.9 165 28.5
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 4.8e-07 58.9 182 24.2
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 6.2e-07 58.5 157 27.4
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 8.1e-07 58.2 179 29.1
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 8.1e-07 58.2 178 29.2
Sabra03G0056300 Salix brachista HOM05D001445 ORTHO05D001261 8.1e-07 58.2 190 27.9
Sabra11G0112900 Salix brachista HOM05D000311 ORTHO05D000183 8.1e-07 58.2 58 43.1
Sp5g12740 Schrenkiella parvula HOM05D009945 ORTHO05D012028 8.1e-07 58.2 167 29.9
Thecc.01G319900 Theobroma cacao HOM05D008191 ORTHO05D010044 8.1e-07 58.2 148 27.7
CDE07G1929 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 1.1e-06 57.8 128 32.8
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.1e-06 57.8 167 26.9
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.1e-06 57.8 167 26.9
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.1e-06 57.8 161 28.0
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.1e-06 57.8 167 26.9
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.1e-06 57.8 148 26.4
Potri.010G209800 Populus trichocarpa HOM05D004113 ORTHO05D005233 1.1e-06 57.8 176 29.0
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 1.1e-06 57.8 181 26.5
Atru.chr2.427 Acer truncatum HOM05D008403 ORTHO05D010317 1.4e-06 57.4 116 27.6
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 1.4e-06 57.4 178 26.4
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 1.4e-06 57.4 166 25.3
Nn5g28620 Nelumbo nucifera HOM05D004113 ORTHO05D005233 1.4e-06 57.4 133 28.6
QL04p032132 Quercus lobata HOM05D003146 ORTHO05D001819 1.4e-06 57.4 151 28.5
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 1.4e-06 57.4 194 28.4
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.8e-06 57.0 164 27.4
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.8e-06 57.0 164 27.4
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 1.8e-06 57.0 165 25.5
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 1.8e-06 57.0 190 26.3
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 1.8e-06 57.0 160 26.9
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 2.4e-06 56.6 173 27.2
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.4e-06 56.6 149 22.8
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 2.4e-06 56.6 150 30.0
BcaB01g00725 Brassica carinata HOM05D009945 ORTHO05D012028 3.1e-06 56.2 167 29.3
Gohir.A01G035300 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.1e-06 56.2 161 28.0
Gohir.D01G023568 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.1e-06 56.2 161 27.3
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.1e-06 56.2 149 22.8
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.1e-06 56.2 161 21.7
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 4.0e-06 55.8 185 25.4
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.0e-06 55.8 167 26.3
PSO832G2548 Papaver somniferum HOM05D004113 ORTHO05D001207 4.0e-06 55.8 124 30.6
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 5.3e-06 55.5 151 29.1
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 5.3e-06 55.5 192 26.0
PGSC0003DMG400037656 Solanum tuberosum HOM05D004113 ORTHO05D005233 5.3e-06 55.5 154 22.7
Thecc.01G128300 Theobroma cacao HOM05D004113 ORTHO05D005233 5.3e-06 55.5 140 28.6
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 5.3e-06 55.5 186 29.6
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.3e-06 55.5 175 26.9
CAN.G676.49 Capsicum annuum HOM05D009933 ORTHO05D012084 6.9e-06 55.1 166 24.1
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 6.9e-06 55.1 155 32.3
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 6.9e-06 55.1 162 24.7
MD07G1088700 Malus domestica HOM05D001445 ORTHO05D001261 6.9e-06 55.1 188 25.0
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 6.9e-06 55.1 185 25.9
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 6.9e-06 55.1 191 28.3
QL04p033186 Quercus lobata HOM05D003146 ORTHO05D001819 6.9e-06 55.1 151 28.5
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 6.9e-06 55.1 163 27.0
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 6.9e-06 55.1 169 27.2
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 6.9e-06 55.1 159 23.3
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 9.0e-06 54.7 178 27.5
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 9.0e-06 54.7 192 25.5
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 9.0e-06 54.7 121 27.3
QL04p005661 Quercus lobata HOM05D003146 ORTHO05D001819 9.0e-06 54.7 138 26.1
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 9.0e-06 54.7 176 27.8


User provided reference genes

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