Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1200400 Malus domestica HOM05D007830 ORTHO05D009947 9.8e-172 607.8 671 100.0
MD04G1187000 Malus domestica HOM05D007830 ORTHO05D009947 8.7e-128 461.8 452 85.6
Prupe.6G305500 Prunus persica HOM05D007830 ORTHO05D009947 1.4e-106 391.3 439 84.7
RcHm_v2.0_Chr3g0458391 Rosa chinensis HOM05D007830 ORTHO05D009947 7.4e-95 352.4 439 78.6
Cfa006760 Carpinus fangiana HOM05D007830 ORTHO05D009947 2.9e-91 340.5 455 71.6
FAN05G5807 Fragaria x ananassa HOM05D007830 ORTHO05D009947 6.5e-91 339.3 439 76.8
QL03p010498 Quercus lobata HOM05D007830 ORTHO05D009947 1.1e-90 338.6 455 71.2
FAN09G0226 Fragaria x ananassa HOM05D007830 ORTHO05D009947 1.5e-90 338.2 439 76.5
Haze_03995 Corylus avellana HOM05D007830 ORTHO05D009947 2.5e-90 337.4 455 70.3
FAN02G3946 Fragaria x ananassa HOM05D007830 ORTHO05D009947 5.5e-90 336.3 440 76.6
QL03p010264 Quercus lobata HOM05D007830 ORTHO05D009947 9.4e-90 335.5 455 68.6
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 4.7e-81 306.6 451 48.3
FvH4_6g08430 Fragaria vesca HOM05D007830 ORTHO05D009947 1.2e-79 302.0 439 73.8
FAN14G2917 Fragaria x ananassa HOM05D007830 ORTHO05D009947 1.7e-78 298.1 438 73.5
Potri.005G003200 Populus trichocarpa HOM05D007830 ORTHO05D009947 3.1e-77 293.9 451 71.4
Sabra05G0014700 Salix brachista HOM05D007830 ORTHO05D009947 2.3e-75 287.7 450 70.9
Sabra05G0000600 Salix brachista HOM05D007830 ORTHO05D009947 1.9e-74 284.6 450 70.7
Ciclev10011168m.g Citrus clementina HOM05D007830 ORTHO05D009947 2.3e-72 277.7 455 67.3
Hma1.2p1_0052F.1_g030410 Hydrangea macrophylla HOM05D007830 ORTHO05D009947 2.0e-71 274.6 455 44.4
Dinv24509 Davidia involucrata HOM05D007830 ORTHO05D009947 2.2e-70 271.2 455 62.2
CANSAT54G0214 Cannabis sativa HOM05D007830 ORTHO05D009947 1.1e-69 268.9 440 58.0
TWI56G0273 Tripterygium wilfordii HOM05D007830 ORTHO05D009947 1.1e-69 268.9 454 62.6
Thecc.05G329100 Theobroma cacao HOM05D007830 ORTHO05D009947 1.8e-69 268.1 455 48.6
Potri.013G002800 Populus trichocarpa HOM05D007830 ORTHO05D009947 4.5e-68 263.5 435 70.8
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 2.9e-67 260.8 455 51.2
Manes.09G180800 Manihot esculenta HOM05D007830 ORTHO05D009947 4.3e-66 256.9 441 66.0
Atru.chr12.1550 Acer truncatum HOM05D007830 ORTHO05D009947 3.6e-65 253.8 230 56.5
Duzib128G1385 Durio zibethinus HOM05D007830 ORTHO05D009947 1.2e-63 248.8 455 53.4
Eucgr.H01319 Eucalyptus grandis HOM05D007830 ORTHO05D009947 5.8e-63 246.5 455 63.7
Glyma.20G092100 Glycine max HOM05D007830 ORTHO05D009947 9.8e-63 245.7 456 59.2
PGR031G1570 Punica granatum HOM05D007830 ORTHO05D009947 1.3e-62 245.4 454 61.7
Ca_10196_v3 Cicer arietinum L. HOM05D007830 ORTHO05D009947 2.2e-62 244.6 455 61.1
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 2.9e-62 244.2 455 60.7
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 4.1e-61 240.4 419 64.7
Lj5g0007590 Lotus japonicus HOM05D007830 ORTHO05D009947 5.4e-61 240.0 455 63.1
Phvul.007G204600 Phaseolus vulgaris HOM05D007830 ORTHO05D009947 7.0e-61 239.6 456 59.0
Psat6g155440 Pisum sativum HOM05D007830 ORTHO05D009947 7.0e-61 239.6 455 64.2
COL.COLO4_05513 Corchorus olitorius HOM05D007830 ORTHO05D009947 9.2e-61 239.2 457 45.7
TPR.G2587 Trifolium pratense HOM05D007830 ORTHO05D009947 1.0e-59 235.7 455 63.1
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 3.9e-59 233.8 453 62.7
VMungo0720G1493 Vigna mungo HOM05D007830 ORTHO05D009947 8.6e-59 232.6 437 62.9
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 3.6e-57 227.3 448 60.0
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 6.2e-57 226.5 455 62.2
PGSC0003DMG400018287 Solanum tuberosum HOM05D007830 ORTHO05D009947 1.4e-56 225.3 455 41.1
Cc02_g35800 Coffea canephora HOM05D007830 ORTHO05D009947 2.3e-56 224.6 453 57.8
Sopen01g044630 Solanum pennellii HOM05D007830 ORTHO05D009947 2.3e-56 224.6 455 54.7
Nitab4.5_0002485g0040 Nicotiana tabacum HOM05D007830 ORTHO05D009947 2.2e-54 218.0 455 49.0
CAN.G1248.21 Capsicum annuum HOM05D007830 ORTHO05D009947 1.4e-53 215.3 456 48.2
Nitab4.5_0005904g0050 Nicotiana tabacum HOM05D007830 ORTHO05D009947 3.5e-52 210.7 223 47.5
SGA_v2.0_scaffold117G32413 Striga asiatica HOM05D007830 ORTHO05D009947 3.5e-52 210.7 442 60.9
GSVIVG01031321001 Vitis vinifera HOM05D007830 ORTHO05D009947 1.7e-51 208.4 204 52.5
Migut.B00878 Erythranthe guttata HOM05D007830 ORTHO05D009947 9.5e-50 202.6 230 48.3
Glyma.20G092800 Glycine max HOM05D007830 ORTHO05D009947 1.1e-48 199.1 189 54.0
AUR62006810 Chenopodium quinoa HOM05D007830 ORTHO05D009947 1.2e-47 195.7 228 45.2
AUR62000469 Chenopodium quinoa HOM05D007830 ORTHO05D009947 2.2e-46 191.4 227 44.1
Gohir.A11G275500 Gossypium hirsutum HOM05D007830 ORTHO05D009947 4.9e-46 190.3 445 56.9
Lsat_1_v5_gn_7_63920 Lactuca sativa HOM05D007830 ORTHO05D009947 2.4e-45 188.0 454 37.2
Nn3g21915 Nelumbo nucifera HOM05D007830 ORTHO05D009947 2.4e-45 188.0 226 45.6
Hund21836 Selenicereus undatus HOM05D007830 ORTHO05D009947 5.4e-45 186.8 225 44.9
Gorai.007G309100 Gossypium raimondii HOM05D007830 ORTHO05D009947 1.3e-43 182.2 193 48.7
Gohir.D11G285900 Gossypium hirsutum HOM05D007830 ORTHO05D009947 8.6e-43 179.5 193 48.2
Sed0014604 Sechium edule HOM05D007830 ORTHO05D009947 1.1e-42 179.1 453 58.9
Ah.10g026910 Amaranthus hybridus HOM05D007830 ORTHO05D009947 5.6e-42 176.8 224 44.2
HanXRQChr03g0088351 Helianthus annuus HOM05D007830 ORTHO05D009947 6.2e-41 173.3 431 37.1
DCAR_029288 Daucus carota HOM05D007830 ORTHO05D009947 6.8e-40 169.9 199 43.7
MBI06_g27503_MAGBIO Magnolia biondii HOM05D007830 ORTHO05D009947 1.5e-39 168.7 454 53.7
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 7.6e-39 166.4 223 41.7
unitig_578.g15943 Utricularia gibba HOM05D007830 ORTHO05D009947 2.4e-37 161.4 212 41.0
CsaV3_3G038190 Cucumis sativus L. HOM05D007830 ORTHO05D009947 2.1e-33 148.3 456 55.3
ClCG10G018110 Citrullus lanatus HOM05D007830 ORTHO05D009947 3.6e-33 147.5 453 54.3
Peaxi162Scf00357g00014 Petunia axillaris HOM05D007830 ORTHO05D009947 1.4e-29 135.6 347 44.1
MELO3C009562.2 Cucumis melo HOM05D007830 ORTHO05D009947 7.1e-29 133.3 456 53.9
ATR0796G327 Amborella trichopoda HOM05D007830 ORTHO05D009947 2.1e-28 131.7 148 43.2
PSO210G0421 Papaver somniferum HOM05D007830 ORTHO05D009947 8.7e-27 126.3 149 43.0
Os03g0795400 Oryza sativa ssp. japonica HOM05D007830 ORTHO05D009947 9.6e-26 122.9 401 37.7
Zm00001eb060630 Zea mays HOM05D007830 ORTHO05D009947 2.1e-20 105.1 186 32.3
Lj5P319T39 Lonicera japonica HOM05D007830 ORTHO05D009947 1.8e-19 102.1 315 69.2
PGR031G3128 Punica granatum HOM05D007830 ORTHO05D009947 1.1e-16 92.8 127 43.3
Aqoxy2G02518 Aquilegia oxysepala HOM05D007830 ORTHO05D009947 2.2e-14 85.1 89 44.9
Solyc01g101150.3 Solanum lycopersicum HOM05D007830 ORTHO05D009947 1.0e-11 76.3 89 41.6
PGR031G2669 Punica granatum HOM05D007830 ORTHO05D009947 5.7e-10 70.5 64 43.8
SEGI_32765 Sequoiadendron giganteum HOM05D002737 ORTHO05D009499 8.2e-09 66.6 126 31.0
MSTRG.5682 Avicennia marina HOM05D006895 ORTHO05D008605 3.1e-08 64.7 123 32.5
Nn8g40743 Nelumbo nucifera HOM05D006895 ORTHO05D008605 1.2e-07 62.8 175 27.4
Hund16389 Selenicereus undatus HOM05D007402 ORTHO05D003673 1.5e-07 62.4 147 29.9
SEGI_29222 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 2.6e-07 61.6 128 31.2
EL10Ac6g13413 Beta vulgaris HOM05D007402 ORTHO05D003673 3.4e-07 61.2 145 29.7
Ah.09g234090 Amaranthus hybridus HOM05D002737 ORTHO05D009499 5.8e-07 60.5 127 26.8
Eucgr.B03979 Eucalyptus grandis HOM05D007409 ORTHO05D009264 5.8e-07 60.5 117 29.1
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 7.6e-07 60.1 138 26.8
CDE04G0992 Ceratophyllum demersum HOM05D000439 ORTHO05D009499 1.0e-06 59.7 180 26.7
Duzib052G0390 Durio zibethinus HOM05D007409 ORTHO05D009264 1.3e-06 59.3 138 26.8
Rhsim04G0155400 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.3e-06 59.3 131 29.0
Gohir.A05G005000 Gossypium hirsutum HOM05D002737 ORTHO05D009499 1.7e-06 58.9 120 28.3
Gorai.009G005800 Gossypium raimondii HOM05D002737 ORTHO05D009499 1.7e-06 58.9 120 28.3
RcHm_v2.0_Chr5g0060431 Rosa chinensis HOM05D007402 ORTHO05D003673 5.0e-06 57.4 137 25.5
Sabra06G0011300 Salix brachista HOM05D002221 ORTHO05D002626 6.5e-06 57.0 156 24.4
CiPaw.10G079400 Carya illinoinensis HOM05D002737 ORTHO05D009499 8.4e-06 56.6 130 28.5


User provided reference genes

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