Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.5e-75 285.4 151 100.0
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 3.3e-35 152.1 152 59.2
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 5.3e-25 118.2 139 54.7
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 5.9e-24 114.8 168 47.6
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.1e-22 110.5 138 53.6
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.1e-22 110.5 138 53.6
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.2e-22 109.0 136 53.7
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 2.1e-21 106.3 168 45.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 2.7e-21 105.9 159 50.3
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.7e-21 105.9 144 49.3
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.3e-20 102.8 167 46.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 6.7e-20 101.3 163 45.4
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 2.0e-19 99.8 122 50.8
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 4.4e-19 98.6 145 47.6
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 4.8e-18 95.1 168 41.7
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 3.1e-17 92.4 150 44.0
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 3.1e-17 92.4 150 44.0
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 4.1e-17 92.0 136 47.1
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.1e-17 92.0 140 45.0
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 7.0e-17 91.3 165 44.8
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.2e-16 90.5 166 44.6
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 2.0e-16 89.7 140 44.3
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.6e-16 89.4 153 45.8
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 7.7e-16 87.8 145 43.4
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 7.7e-16 87.8 141 44.0
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.0e-15 87.4 163 44.2
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.0e-15 87.4 165 43.0
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.3e-15 87.0 161 44.7
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 3.8e-15 85.5 167 40.7
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 6.5e-15 84.7 149 40.3
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.1e-14 84.0 160 39.4
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.9e-14 83.2 141 46.8
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.5e-14 82.8 146 44.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.6e-13 80.1 148 43.2
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 3.6e-13 79.0 150 40.0
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 3.6e-13 79.0 151 43.7
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 4.7e-13 78.6 104 44.2
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 4.7e-13 78.6 91 50.5
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 6.1e-13 78.2 115 43.5
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 6.1e-13 78.2 123 46.3
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 8.0e-13 77.8 104 44.2
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.4e-12 77.0 143 44.8
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 2.3e-12 76.3 165 37.0
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 2.3e-12 76.3 120 40.0
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 4.0e-12 75.5 118 40.7
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 4.0e-12 75.5 122 45.1
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 4.0e-12 75.5 164 36.0
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 5.2e-12 75.1 112 43.8
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 6.7e-12 74.7 66 57.6
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 6.7e-12 74.7 146 36.3
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 8.8e-12 74.3 102 42.2
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 8.8e-12 74.3 109 42.2
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 1.2e-11 73.9 93 46.2
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 1.5e-11 73.6 102 42.2
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.0e-11 73.2 70 52.9
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.0e-11 73.2 70 52.9
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 2.0e-11 73.2 166 38.0
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 2.0e-11 73.2 90 53.3
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.6e-11 72.8 101 48.5
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 4.4e-11 72.0 133 44.4
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 7.5e-11 71.2 114 43.9
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 1.7e-10 70.1 162 37.0
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 2.2e-10 69.7 42 73.8
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.8e-10 69.3 115 46.1
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 3.7e-10 68.9 114 43.9
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 3.7e-10 68.9 121 42.1
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 1.8e-09 66.6 95 42.1
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 2.4e-09 66.2 116 41.4
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 2.4e-09 66.2 119 43.7
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 2.4e-09 66.2 110 44.5
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 5.3e-09 65.1 136 41.2
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 9.1e-09 64.3 138 34.8
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.6e-08 63.5 39 71.8
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 3.5e-08 62.4 97 42.3
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.5e-08 62.0 64 45.3
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 5.9e-08 61.6 72 50.0
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 7.7e-08 61.2 123 42.3
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.0e-07 60.8 134 38.8
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.0e-07 60.8 38 71.1
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.3e-07 60.5 64 51.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.3e-07 60.5 71 46.5
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.9e-07 59.3 86 38.4
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.9e-07 59.3 77 42.9
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.9e-07 59.3 67 49.3
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 5.0e-07 58.5 50 60.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 5.0e-07 58.5 72 47.2
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 5.0e-07 58.5 86 43.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.5e-07 58.2 81 43.2
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 6.5e-07 58.2 39 64.1
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 6.5e-07 58.2 47 59.6
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 6.5e-07 58.2 98 40.8
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 8.5e-07 57.8 64 50.0
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 1.1e-06 57.4 152 30.3
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.5e-06 57.0 120 36.7
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.5e-06 57.0 77 45.5
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.5e-06 57.0 69 49.3
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.5e-06 57.0 39 59.0
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 1.9e-06 56.6 98 39.8
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.9e-06 56.6 98 39.8
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.9e-06 56.6 98 39.8
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.9e-06 56.6 98 39.8
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.9e-06 56.6 98 39.8
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.9e-06 56.6 77 48.1
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-06 56.6 53 49.1
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.9e-06 56.6 37 64.9
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.9e-06 56.6 67 49.3
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.9e-06 56.6 77 48.1
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.5e-06 56.2 88 43.2
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.5e-06 56.2 86 44.2
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.5e-06 56.2 86 44.2
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.5e-06 56.2 68 44.1
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.5e-06 56.2 67 49.3
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 3.2e-06 55.8 70 42.9
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.2e-06 55.8 99 43.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 3.2e-06 55.8 65 44.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 4.2e-06 55.5 99 39.4
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 4.2e-06 55.5 64 51.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 4.2e-06 55.5 127 31.5
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 5.5e-06 55.1 132 37.1
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 5.5e-06 55.1 141 33.3


User provided reference genes

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