Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 2.5e-43 178.3 87 100.0
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.2e-34 149.4 88 86.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 1.7e-23 112.5 96 69.8
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 2.1e-18 95.5 82 61.0
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 4.7e-18 94.4 93 58.1
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 2.4e-17 92.0 84 58.3
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.0e-17 91.3 81 59.3
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 4.0e-17 91.3 81 59.3
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 4.0e-17 91.3 93 55.9
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 6.8e-17 90.5 93 59.1
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.2e-16 89.7 85 57.6
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.2e-16 89.7 93 54.8
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 1.2e-16 89.7 91 57.1
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 1.2e-16 89.7 91 57.1
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.5e-16 89.4 94 51.1
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 2.6e-16 88.6 81 58.0
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 3.4e-16 88.2 94 51.1
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 3.4e-16 88.2 90 54.4
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 5.8e-16 87.4 86 58.1
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 7.6e-16 87.0 90 53.3
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 7.6e-16 87.0 74 59.5
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.3e-15 86.3 96 51.0
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.7e-15 85.9 99 51.5
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.2e-15 85.5 91 57.1
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.9e-15 85.1 85 55.3
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.8e-15 84.7 96 46.9
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 4.9e-15 84.3 100 49.0
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.1e-14 83.2 79 53.2
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.1e-14 83.2 97 49.5
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.9e-14 82.4 83 56.6
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.9e-14 82.4 91 52.7
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 3.2e-14 81.6 84 57.1
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 3.2e-14 81.6 81 54.3
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 7.1e-14 80.5 87 51.7
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.2e-13 79.7 86 48.8
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.2e-13 79.7 92 51.1
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.6e-13 79.3 93 49.5
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 1.6e-13 79.3 86 53.5
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 2.7e-13 78.6 96 49.0
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 3.5e-13 78.2 91 49.5
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 4.6e-13 77.8 95 47.4
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 6.0e-13 77.4 85 54.1
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 7.8e-13 77.0 96 47.9
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 7.8e-13 77.0 82 50.0
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.0e-12 76.6 93 51.6
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.3e-12 76.3 103 48.5
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.7e-12 75.9 84 54.8
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 1.7e-12 75.9 81 54.3
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 1.7e-12 75.9 93 49.5
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.9e-12 74.7 107 46.7
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 5.1e-12 74.3 95 48.4
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 6.6e-12 73.9 82 52.4
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 6.6e-12 73.9 80 53.8
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 8.7e-12 73.6 86 50.0
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 8.7e-12 73.6 98 46.9
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.1e-11 73.2 81 54.3
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.9e-11 72.4 91 50.5
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 2.5e-11 72.0 86 47.7
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.5e-11 72.0 90 47.8
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 4.3e-11 71.2 82 57.3
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 4.3e-11 71.2 100 43.0
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 5.6e-11 70.9 91 45.1
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 5.6e-11 70.9 85 50.6
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 7.3e-11 70.5 87 49.4
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 7.3e-11 70.5 92 45.7
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 9.6e-11 70.1 97 46.4
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.3e-10 69.7 100 43.0
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.6e-10 69.3 83 48.2
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.1e-10 68.9 88 46.6
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.8e-10 68.6 84 50.0
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 6.2e-10 67.4 79 50.6
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 1.4e-09 66.2 85 48.2
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 4.0e-09 64.7 80 48.8
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 5.3e-09 64.3 86 46.5
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.2e-08 63.2 84 47.6
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 2.0e-08 62.4 77 48.1
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.0e-08 62.4 91 42.9
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 2.0e-08 62.4 86 43.0
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.6e-08 62.0 82 47.6
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 2.6e-08 62.0 80 50.0
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 9.9e-08 60.1 84 41.7
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.3e-07 59.7 61 59.0
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 1.7e-07 59.3 85 43.5
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 1.7e-07 59.3 80 53.8
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.7e-07 59.3 102 42.2
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 2.9e-07 58.5 58 60.3
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 2.4e-06 55.5 78 43.6
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 3.2e-06 55.1 50 56.0
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 4.2e-06 54.7 82 43.9


User provided reference genes

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