Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 6.3e-73 277.3 138 100.0
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 2.0e-39 166.0 119 77.3
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 8.5e-38 160.6 119 68.9
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.7e-36 155.6 119 68.1
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.2e-33 146.0 119 66.4
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.2e-33 146.0 119 66.4
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 1.4e-32 143.3 119 65.5
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.1e-32 142.1 119 63.0
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 3.4e-26 122.1 134 56.7
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 4.4e-26 121.7 137 51.8
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 4.4e-26 121.7 128 53.9
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 4.4e-26 121.7 120 57.5
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 9.8e-26 120.6 144 48.6
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 1.4e-24 116.7 120 55.8
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 2.4e-24 115.9 64 87.5
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 3.2e-24 115.5 112 58.9
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 2.0e-23 112.8 131 54.2
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 4.6e-23 111.7 113 56.6
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 7.8e-23 110.9 120 55.0
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 1.3e-22 110.2 111 55.9
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 2.3e-22 109.4 112 58.0
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 3.9e-22 108.6 126 54.0
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 6.6e-22 107.8 124 50.0
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 6.6e-22 107.8 126 54.0
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 6.6e-22 107.8 112 57.1
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 8.6e-22 107.5 119 51.3
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 8.6e-22 107.5 112 56.2
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 8.6e-22 107.5 112 56.2
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 8.6e-22 107.5 113 56.6
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 1.1e-21 107.1 118 52.5
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 2.5e-21 105.9 129 53.5
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 5.6e-21 104.8 119 51.3
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 9.5e-21 104.0 119 52.9
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 1.6e-20 103.2 128 47.7
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 8.9e-19 97.4 116 53.4
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 1.5e-18 96.7 116 47.4
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 2.6e-18 95.9 118 49.2
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 4.4e-18 95.1 116 47.4
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 5.8e-18 94.7 119 49.6
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 9.8e-18 94.0 119 49.6
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 1.3e-17 93.6 111 50.5
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 3.7e-17 92.0 113 46.9
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 4.9e-17 91.7 112 50.9
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 4.9e-17 91.7 121 48.8
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 1.4e-16 90.1 95 55.8
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 1.9e-16 89.7 112 46.4
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 2.4e-16 89.4 107 51.4
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 2.4e-16 89.4 107 48.6
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 3.2e-16 89.0 116 45.7
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 5.4e-16 88.2 119 45.4
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 7.0e-16 87.8 116 45.7
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 9.2e-16 87.4 128 46.1
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 9.2e-16 87.4 118 45.8
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 1.2e-15 87.0 112 45.5
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 2.0e-15 86.3 124 46.8
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 2.7e-15 85.9 150 41.3
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 3.5e-15 85.5 115 44.3
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 7.8e-15 84.3 117 47.0
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-14 84.0 115 44.3
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-14 84.0 111 45.9
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 1.3e-14 83.6 120 45.0
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-14 83.2 115 44.3
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 2.3e-14 82.8 111 51.4
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 2.3e-14 82.8 109 49.5
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 3.9e-14 82.0 110 49.1
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 8.6e-14 80.9 124 43.5
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-13 80.5 107 44.9
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 7.3e-13 77.8 120 45.0
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 7.3e-13 77.8 114 49.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 9.5e-13 77.4 51 72.5
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 1.2e-12 77.0 117 46.2
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 2.8e-12 75.9 109 47.7
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 1.1e-11 73.9 106 47.2
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 2.3e-11 72.8 118 42.4
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 1.2e-10 70.5 118 45.8
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 6.4e-09 64.7 112 45.5
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 8.3e-09 64.3 72 48.6
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 8.3e-09 64.3 100 43.0
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 1.4e-08 63.5 109 45.0
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 1.4e-08 63.5 109 45.0
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 1.9e-08 63.2 105 45.7
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.9e-08 63.2 118 39.0
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 1.9e-08 63.2 118 39.0
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 2.4e-08 62.8 111 45.0
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 7.1e-08 61.2 118 38.1
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 2.7e-07 59.3 109 45.0
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 3.5e-07 58.9 110 44.5
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 6.0e-07 58.2 112 42.9
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 7.8e-07 57.8 52 57.7
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 7.8e-07 57.8 52 57.7
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 7.8e-07 57.8 52 57.7
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 7.8e-07 57.8 52 57.7


User provided reference genes

Program Settings