Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 5.5e-204 714.1 382 100.0
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 6.2e-179 630.9 462 74.5
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 3.3e-172 608.6 462 70.1
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 3.5e-134 482.3 459 60.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-131 473.8 463 58.1
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-129 466.5 469 58.4
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 5.9e-121 438.3 463 53.8
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.7e-112 410.2 462 52.4
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.5e-111 407.1 482 48.8
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 5.2e-109 398.7 471 50.5
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.2e-109 398.7 465 50.5
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.0e-108 396.7 465 50.3
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.6e-108 396.4 459 49.9
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.6e-108 396.4 465 50.5
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 7.4e-108 394.8 469 48.8
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.3e-107 394.0 462 51.1
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.7e-107 392.5 466 48.5
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 1.1e-106 391.0 465 49.5
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 9.1e-106 387.9 466 50.4
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.6e-105 387.1 466 49.6
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.6e-105 387.1 473 49.0
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.9e-104 382.9 467 48.4
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.8e-104 382.5 464 48.3
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 5.0e-104 382.1 477 49.7
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 5.0e-104 382.1 488 49.8
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.2e-103 379.0 467 49.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 9.4e-103 377.9 471 47.6
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 8.8e-101 371.3 483 50.1
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.0e-100 370.2 463 47.1
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 3.4e-100 369.4 471 46.9
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.4e-98 364.0 453 48.1
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.0e-97 360.1 470 48.9
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.5e-97 359.4 463 46.7
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 6.5e-96 355.1 483 48.2
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.9e-95 353.6 465 44.9
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.6e-94 349.4 463 45.1
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 2.3e-93 346.7 472 44.3
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 3.0e-93 346.3 468 44.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.3e-91 338.6 468 44.4
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.3e-91 338.2 463 44.9
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.8e-90 337.0 465 44.3
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 3.1e-90 336.3 467 45.0
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 5.9e-89 332.0 462 43.7
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 2.3e-88 330.1 467 43.7
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.8e-88 329.3 462 43.9
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 6.6e-88 328.6 469 43.5
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.5e-87 326.6 478 43.5
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 2.5e-87 326.6 467 43.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.3e-87 326.2 457 43.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.3e-87 326.2 467 43.0
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.3e-87 326.2 467 43.0
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 4.2e-87 325.9 468 44.4
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 5.6e-87 325.5 467 43.5
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.6e-86 323.9 457 43.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.8e-86 323.2 462 43.9
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.6e-86 322.8 467 43.0
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.7e-86 322.4 468 43.8
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.0e-86 321.6 468 44.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.2e-84 317.8 458 42.4
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.4e-84 316.2 460 42.2
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.4e-84 316.2 452 42.9
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.2e-83 313.5 462 42.4
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.7e-83 312.8 469 42.6
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 6.4e-83 312.0 470 41.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.1e-82 311.2 461 43.0
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.4e-82 310.8 467 43.9
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.2e-82 309.7 461 42.7
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.2e-82 309.7 443 42.9
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 9.2e-82 308.1 477 42.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 5.0e-80 302.4 466 41.8
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.0e-80 302.4 464 41.4
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.1e-79 301.2 467 41.8
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 4.7e-78 295.8 469 40.9
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.0e-77 294.7 469 40.7
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.8e-77 293.9 469 41.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 5.2e-77 292.4 469 40.5
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 8.9e-77 291.6 452 41.6
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.7e-75 287.3 424 43.6
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.2e-75 287.0 442 42.1
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.9e-74 283.9 304 55.9
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.2e-73 281.2 450 40.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-73 280.4 300 55.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-73 280.4 300 55.0
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.0e-72 278.1 456 39.5
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 2.5e-71 273.5 455 38.2
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 7.3e-71 271.9 459 39.2
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.5e-71 271.6 358 48.3
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 2.1e-70 270.4 462 40.9
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.8e-70 270.0 433 41.8
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 2.0e-68 263.8 440 39.8
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 2.0e-68 263.8 440 39.8
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 8.3e-67 258.5 432 38.0
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.1e-66 258.1 456 37.9
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.1e-66 258.1 465 37.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 7.1e-66 255.4 433 38.6
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 9.2e-66 255.0 602 32.1
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 4.6e-65 252.7 456 35.7
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.0e-64 251.5 485 38.6
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.1e-63 248.1 469 38.4
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.3e-63 246.5 459 34.0
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 7.3e-63 245.4 484 38.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 9.5e-63 245.0 379 42.0
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 9.5e-63 245.0 513 34.7
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.1e-61 241.5 449 35.2
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-61 241.1 449 35.2
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.2e-60 238.0 462 34.8
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.7e-59 233.0 442 36.7
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-57 226.9 319 43.3
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.0e-56 223.4 438 34.5
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 3.9e-56 223.0 259 48.3
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.5e-55 221.1 463 34.6
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.5e-55 221.1 580 32.1
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.8e-53 214.2 449 34.1
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 6.4e-51 205.7 254 45.3
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 4.2e-50 203.0 381 36.0
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 4.2e-50 203.0 235 50.2
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.0e-49 199.1 189 60.8
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.3e-48 198.0 435 33.1
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.5e-47 193.7 445 31.7
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 3.3e-47 193.4 479 31.5
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.7e-43 181.0 390 37.7
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.9e-43 180.3 156 66.0
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 8.4e-43 178.7 432 31.7
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-42 177.9 191 57.6
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.1e-42 175.6 108 78.7
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.1e-39 168.3 252 42.1
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.3e-37 159.5 129 58.9
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.7e-35 154.5 419 28.9
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 2.2e-35 154.1 413 29.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.8e-32 144.4 253 37.2
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 8.7e-32 142.1 225 41.8
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 4.3e-31 139.8 399 29.3
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 9.6e-31 138.7 225 40.9
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.2e-28 131.7 234 40.6
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 3.2e-26 123.6 439 28.5
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.8e-24 117.9 140 42.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.3e-24 117.5 99 57.6
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-22 111.3 415 28.4
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-22 110.9 90 68.9
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.7e-22 110.2 244 33.2
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-21 108.2 90 67.8
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.4e-21 107.5 131 49.6
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-21 106.7 76 73.7
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 9.0e-21 105.5 422 27.5
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.6e-20 104.0 164 36.0
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-19 102.1 85 65.9
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 6.5e-19 99.4 416 28.1
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.1e-18 98.6 439 26.4
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.2e-18 96.7 235 31.5
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.0e-16 92.0 125 44.8
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.0e-16 92.0 125 44.8
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.9e-15 87.8 134 36.6
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.4e-15 85.9 180 33.9
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 3.7e-14 83.6 87 58.6
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.4e-13 80.9 421 24.2
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 7.7e-12 75.9 378 24.3
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 2.9e-11 73.9 130 34.6
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 2.5e-10 70.9 109 40.4
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 9.7e-07 58.9 57 49.1


User provided reference genes

Program Settings