Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 2.3e-128 462.2 229 100.0
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 9.3e-98 360.5 231 79.2
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 3.6e-89 332.0 239 73.2
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 4.3e-87 325.1 232 72.0
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 6.3e-86 321.2 232 71.6
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 2.5e-82 309.3 243 65.4
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 4.2e-82 308.5 227 68.7
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 2.7e-81 305.8 243 63.8
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 7.9e-81 304.3 226 66.4
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 3.9e-80 302.0 249 62.7
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 7.4e-79 297.7 203 70.0
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 1.3e-78 297.0 241 63.1
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 1.7e-78 296.6 237 64.6
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 3.7e-78 295.4 240 62.9
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.8e-77 293.1 239 65.3
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 7.0e-77 291.2 236 64.0
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 7.0e-77 291.2 228 65.8
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 7.0e-77 291.2 239 64.4
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 2.6e-76 289.3 238 61.8
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 5.9e-76 288.1 245 62.0
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 2.9e-75 285.8 230 63.0
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 3.8e-75 285.4 231 62.8
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 5.0e-75 285.0 232 64.2
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 6.5e-75 284.6 251 59.4
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 8.5e-75 284.3 226 64.2
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 1.1e-74 283.9 213 64.8
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.1e-74 283.9 243 62.1
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 1.4e-74 283.5 239 60.3
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 2.5e-74 282.7 229 61.1
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 2.5e-74 282.7 233 62.2
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.2e-74 282.3 231 63.2
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 9.4e-74 280.8 232 62.1
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.6e-73 280.0 236 63.1
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 2.7e-73 279.3 231 62.3
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 8.0e-73 277.7 244 62.7
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 2.3e-72 276.2 238 61.8
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 2.3e-72 276.2 251 58.2
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 3.9e-72 275.4 240 58.3
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 5.2e-72 275.0 212 64.2
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 8.8e-72 274.2 229 60.7
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 1.5e-71 273.5 236 59.3
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 2.0e-71 273.1 212 63.7
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 2.0e-71 273.1 238 60.9
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 2.6e-71 272.7 232 61.6
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 2.6e-71 272.7 228 62.7
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 2.6e-71 272.7 269 55.8
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 7.4e-71 271.2 201 66.7
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.8e-70 269.2 233 61.4
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 2.8e-70 269.2 229 59.4
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 3.7e-70 268.9 224 61.2
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 3.7e-70 268.9 232 59.9
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 8.2e-70 267.7 225 57.8
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 1.1e-69 267.3 224 59.8
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 1.1e-69 267.3 234 63.2
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 1.4e-69 266.9 228 60.5
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 2.4e-69 266.2 227 59.5
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 4.1e-69 265.4 227 59.9
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 2.0e-68 263.1 228 61.8
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 2.0e-68 263.1 244 57.4
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 2.0e-68 263.1 228 59.2
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 4.5e-68 261.9 241 56.0
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 4.5e-68 261.9 209 62.2
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 5.9e-68 261.5 232 58.2
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 7.7e-68 261.2 238 59.7
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 1.7e-67 260.0 229 56.8
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 1.7e-67 260.0 229 56.8
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 2.9e-67 259.2 227 58.6
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 6.5e-67 258.1 206 65.0
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 8.5e-67 257.7 243 57.6
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 1.1e-66 257.3 225 57.3
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 2.5e-66 256.1 225 57.3
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 2.5e-66 256.1 225 57.3
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.5e-66 255.0 202 61.4
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 9.4e-66 254.2 224 58.0
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 4.7e-65 251.9 246 54.5
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 4.0e-64 248.8 210 59.0
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 9.7e-63 244.2 235 55.7
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 2.2e-62 243.0 236 55.9
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 4.8e-62 241.9 225 54.7
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 4.8e-62 241.9 217 56.2
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 6.3e-62 241.5 235 54.9
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 1.4e-61 240.4 154 70.8
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 2.4e-61 239.6 192 60.4
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 2.4e-61 239.6 199 59.8
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 2.7e-60 236.1 223 54.7
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 1.0e-59 234.2 197 58.4
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.2e-59 233.0 224 53.6
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 2.0e-55 219.9 165 68.5
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 9.8e-55 217.6 169 65.1
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.7e-51 206.8 129 68.2
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 4.1e-45 185.7 215 46.5
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 5.4e-45 185.3 109 73.4
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 2.7e-44 183.0 108 74.1
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 1.1e-42 177.6 314 39.5
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 2.5e-42 176.4 109 70.6
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 5.6e-42 175.3 108 73.1
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 8.0e-41 171.4 135 54.1
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 2.3e-40 169.9 177 50.8
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 7.5e-39 164.9 110 63.6
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 1.3e-35 154.1 130 56.2
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 5.0e-35 152.1 96 74.0
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 2.3e-32 143.3 86 74.4
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.3e-27 127.5 77 72.7
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.7e-27 127.1 180 38.9
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 1.1e-26 124.4 76 72.4
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 8.3e-22 108.2 132 40.9
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 1.4e-21 107.5 68 75.0
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 1.4e-21 107.5 68 75.0
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 1.6e-20 104.0 67 77.6
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 6.2e-17 92.0 149 44.3
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 1.4e-16 90.9 71 57.7
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 6.8e-16 88.6 58 69.0
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 8.9e-16 88.2 137 45.3
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 3.8e-14 82.8 169 30.8
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 1.1e-10 71.2 44 65.9
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 6.9e-08 62.0 73 45.2
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 6.9e-08 62.0 73 45.2
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 2.6e-07 60.1 131 33.6


User provided reference genes

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