Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1097500 Malus domestica HOM05D005371 ORTHO05D034977 2.6e-18 94.4 47 100.0
MD13G1180900 Malus domestica HOM05D005371 ORTHO05D006863 5.5e-13 76.6 45 86.7
MD16G1181600 Malus domestica HOM05D005371 ORTHO05D006863 2.1e-12 74.7 45 84.4
CANSAT78G0247 Cannabis sativa HOM05D005371 ORTHO05D006863 4.0e-11 70.5 45 73.3
Ciclev10026219m.g Citrus clementina HOM05D005371 ORTHO05D006863 4.0e-11 70.5 45 77.8
Prupe.1G149000 Prunus persica HOM05D005371 ORTHO05D006863 5.2e-11 70.1 45 77.8
Atru.chr4.2593 Acer truncatum HOM05D005371 ORTHO05D006863 1.2e-10 68.9 45 73.3
Ciclev10005567m.g Citrus clementina HOM05D005371 ORTHO05D006863 1.2e-10 68.9 45 73.3
PSO135G0635 Papaver somniferum HOM05D005371 ORTHO05D006863 3.4e-10 67.4 45 71.1
PGR031G1359 Punica granatum HOM05D005371 ORTHO05D006863 3.4e-10 67.4 45 73.3
Hund12213 Selenicereus undatus HOM05D005371 ORTHO05D006863 4.4e-10 67.0 45 73.3
Cc03_g02980 Coffea canephora HOM05D005371 ORTHO05D006863 7.5e-10 66.2 45 71.1
DCAR_021293 Daucus carota HOM05D005371 ORTHO05D006863 9.8e-10 65.9 40 77.5
Hma1.2p1_3925F.1_g337960 Hydrangea macrophylla HOM05D005371 ORTHO05D006863 9.8e-10 65.9 45 71.1
Lj6g0013027 Lotus japonicus HOM05D005371 ORTHO05D006863 9.8e-10 65.9 45 66.7
CsaV3_3G013820 Cucumis sativus L. HOM05D005371 ORTHO05D006863 1.3e-09 65.5 45 68.9
Lalb_Chr20g0118351 Lupinus albus HOM05D005371 ORTHO05D006863 1.3e-09 65.5 45 66.7
Potri.010G029400 Populus trichocarpa HOM05D005371 ORTHO05D006863 1.3e-09 65.5 45 73.3
Actinidia00081 Actinidia chinensis HOM05D005371 ORTHO05D006863 1.7e-09 65.1 45 66.7
MELO3C006575.2 Cucumis melo HOM05D005371 ORTHO05D006863 1.7e-09 65.1 45 66.7
CSS0011749 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 2.2e-09 64.7 45 68.9
CSS0026299 Camellia sinensis var. sinensis HOM05D005371 ORTHO05D006863 2.2e-09 64.7 45 68.9
Manes.03G186400 Manihot esculenta HOM05D005371 ORTHO05D006863 2.2e-09 64.7 45 71.1
Potri.008G200600 Populus trichocarpa HOM05D005371 ORTHO05D006863 2.2e-09 64.7 45 71.1
RcHm_v2.0_Chr4g0418951 Rosa chinensis HOM05D005371 ORTHO05D006863 2.2e-09 64.7 45 71.1
vmacro15298 Vaccinium macrocarpon HOM05D005371 ORTHO05D006863 2.2e-09 64.7 45 66.7
Atru.chr4.2595 Acer truncatum HOM05D005371 ORTHO05D006863 2.8e-09 64.3 45 68.9
TAR633G1547 Trochodendron aralioides HOM05D005371 ORTHO05D006863 2.8e-09 64.3 45 68.9
Aqoxy7G00162 Aquilegia oxysepala HOM05D005371 ORTHO05D006863 3.7e-09 63.9 45 68.9
CsaV3_3G013810 Cucumis sativus L. HOM05D005371 ORTHO05D006863 3.7e-09 63.9 45 66.7
Glyma.13G210400 Glycine max HOM05D005371 ORTHO05D006863 3.7e-09 63.9 45 64.4
TWI53G1142 Tripterygium wilfordii HOM05D005371 ORTHO05D006863 3.7e-09 63.9 45 66.7
Cpa.g.sc16.46 Carica papaya HOM05D005371 ORTHO05D006863 4.8e-09 63.5 45 68.9
FAN17G2777 Fragaria x ananassa HOM05D005371 ORTHO05D006863 4.8e-09 63.5 45 71.1
Glyma.15G102400 Glycine max HOM05D005371 ORTHO05D006863 4.8e-09 63.5 41 68.3
Nn2g14732 Nelumbo nucifera HOM05D005371 ORTHO05D006863 4.8e-09 63.5 45 64.4
Sabra08G0160600 Salix brachista HOM05D005371 ORTHO05D006863 4.8e-09 63.5 45 71.1
TAR362G1168 Trochodendron aralioides HOM05D005371 ORTHO05D006863 4.8e-09 63.5 45 66.7
TAR362G1313 Trochodendron aralioides HOM05D005371 ORTHO05D006863 4.8e-09 63.5 45 66.7
Eucgr.B01158 Eucalyptus grandis HOM05D005371 ORTHO05D006863 6.3e-09 63.2 45 66.7
FAN07G1015 Fragaria x ananassa HOM05D005371 ORTHO05D006863 6.3e-09 63.2 45 71.1
Rhsim02G0018900 Rhododendron simsii HOM05D005371 ORTHO05D006863 6.3e-09 63.2 45 64.4
Sed0019484 Sechium edule HOM05D005371 ORTHO05D006863 6.3e-09 63.2 41 70.7
CARHR194010 Cardamine hirsuta HOM05D005371 ORTHO05D006863 8.3e-09 62.8 40 70.0
MELO3C006574.2 Cucumis melo HOM05D005371 ORTHO05D006863 8.3e-09 62.8 45 64.4
Phvul.006G155400 Phaseolus vulgaris HOM05D005371 ORTHO05D006863 8.3e-09 62.8 45 64.4
Oeu023656.1 Olea europaea HOM05D005371 ORTHO05D006863 1.1e-08 62.4 45 68.9
EL10Ac6g13948 Beta vulgaris HOM05D005371 ORTHO05D006863 1.4e-08 62.0 45 66.7
CAN.G652.5 Capsicum annuum HOM05D005371 ORTHO05D006863 1.4e-08 62.0 45 66.7
VMungo0540G1614 Vigna mungo HOM05D000137 ORTHO05D000503 1.4e-08 62.0 45 62.2
MELO3C028582.2 Cucumis melo HOM05D005371 ORTHO05D034977 1.8e-08 61.6 41 68.3
CiPaw.01G158300 Carya illinoinensis HOM05D005371 ORTHO05D006863 2.4e-08 61.2 45 62.2
CDE02G4078 Ceratophyllum demersum HOM05D005371 ORTHO05D006863 2.4e-08 61.2 40 70.0
CsaV3_7G008570 Cucumis sativus L. HOM05D005371 ORTHO05D006863 2.4e-08 61.2 46 63.0
FvH4_4g14220 Fragaria vesca HOM05D005371 ORTHO05D006863 2.4e-08 61.2 45 68.9
TPR.G28919 Trifolium pratense HOM05D005371 ORTHO05D006863 2.4e-08 61.2 45 64.4
MBI13_g15010_MAGBIO Magnolia biondii HOM05D005371 ORTHO05D006863 3.1e-08 60.8 45 64.4
Nitab4.5_0007396g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 3.1e-08 60.8 45 64.4
Nitab4.5_0012725g0010 Nicotiana tabacum HOM05D005371 ORTHO05D006863 3.1e-08 60.8 45 64.4
Lsat_1_v5_gn_8_20540 Lactuca sativa HOM05D005371 ORTHO05D006863 4.1e-08 60.5 45 64.4
Peaxi162Scf00589g00036 Petunia axillaris HOM05D005371 ORTHO05D006863 4.1e-08 60.5 45 64.4
Sed0017990 Sechium edule HOM05D005371 ORTHO05D006863 4.1e-08 60.5 40 70.0
Aa31LG5G16730 Aethionema arabicum HOM05D005371 ORTHO05D006863 5.4e-08 60.1 45 60.0
Thhalv10016095m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 5.4e-08 60.1 40 65.0
PGSC0003DMG400035738 Solanum tuberosum HOM05D005371 ORTHO05D006863 5.4e-08 60.1 45 64.4
Aa31LG11G10740 Aethionema arabicum HOM05D005371 ORTHO05D006863 7.0e-08 59.7 40 65.0
Ah.13g074330 Amaranthus hybridus HOM05D005371 ORTHO05D006863 7.0e-08 59.7 45 62.2
AL3G17060 Arabidopsis lyrata HOM05D005371 ORTHO05D006863 7.0e-08 59.7 40 67.5
AT3G06200 Arabidopsis thaliana HOM05D005371 ORTHO05D006863 7.0e-08 59.7 40 67.5
Medtr2g021320 Medicago truncatula HOM05D005371 ORTHO05D006863 7.0e-08 59.7 44 59.1
Sp3g05120 Schrenkiella parvula HOM05D005371 ORTHO05D006863 7.0e-08 59.7 40 67.5
Solyc11g005900.2 Solanum lycopersicum HOM05D005371 ORTHO05D006863 1.2e-07 58.9 45 62.2
Sopen11g001840 Solanum pennellii HOM05D005371 ORTHO05D006863 1.2e-07 58.9 45 62.2
Haze_00980 Corylus avellana HOM05D005371 ORTHO05D006863 1.6e-07 58.5 45 62.2
Haze_00986 Corylus avellana HOM05D005371 ORTHO05D006863 1.6e-07 58.5 45 62.2
Haze_00989 Corylus avellana HOM05D005371 ORTHO05D006863 1.6e-07 58.5 45 62.2
MSTRG.24760 Avicennia marina HOM05D005371 ORTHO05D006863 2.0e-07 58.2 45 60.0
SalBow2G1082 Salvia bowleyana HOM05D000137 ORTHO05D000503 2.0e-07 58.2 45 60.0
Zm00001eb015260 Zea mays HOM05D005371 ORTHO05D006863 2.0e-07 58.2 40 62.5
BcaC05g30047 Brassica carinata HOM05D005371 ORTHO05D006863 2.7e-07 57.8 40 62.5
Sp6g25400 Schrenkiella parvula HOM05D005371 ORTHO05D006863 2.7e-07 57.8 40 60.0
Thhalv10021285m.g Eutrema salsugineum HOM05D005371 ORTHO05D006863 3.5e-07 57.4 40 65.0
Sc19g0004630 Simmondsia chinensis HOM05D005371 ORTHO05D006863 4.5e-07 57.0 45 62.2
MSTRG.3982 Avicennia marina HOM05D005371 ORTHO05D006863 5.9e-07 56.6 45 60.0
Carub.0006s1730 Capsella rubella HOM05D005371 ORTHO05D006863 5.9e-07 56.6 40 57.5
ClCG05G005500 Citrullus lanatus HOM05D005371 ORTHO05D006863 5.9e-07 56.6 37 70.3
FAN12G2714 Fragaria x ananassa HOM05D005371 ORTHO05D006863 5.9e-07 56.6 40 67.5
HPP92_012442 Vanilla planifolia HOM05D005371 ORTHO05D006863 5.9e-07 56.6 40 65.0
A05p41790 Brassica napus HOM05D005371 ORTHO05D006863 7.7e-07 56.2 40 60.0
BraA05t22898Z Brassica rapa HOM05D005371 ORTHO05D006863 7.7e-07 56.2 40 60.0
AUR62002624 Chenopodium quinoa HOM05D005371 ORTHO05D006863 7.7e-07 56.2 45 57.8
AUR62030040 Chenopodium quinoa HOM05D005371 ORTHO05D006863 7.7e-07 56.2 45 57.8
Ca_00612_v3 Cicer arietinum L. HOM05D005371 ORTHO05D006863 7.7e-07 56.2 37 67.6
Glyma.08G237000 Glycine max HOM05D005371 ORTHO05D034977 7.7e-07 56.2 34 73.5
Oeu037674.1 Olea europaea HOM05D005371 ORTHO05D006863 7.7e-07 56.2 45 60.0
CARHR080720 Cardamine hirsuta HOM05D005371 ORTHO05D006863 1.0e-06 55.8 40 62.5
BcaC05g29797 Brassica carinata HOM05D005371 ORTHO05D006863 1.3e-06 55.5 40 60.0
HanXRQChr08g0218651 Helianthus annuus HOM05D005371 ORTHO05D006863 1.3e-06 55.5 44 54.5
Carub.0003s0564 Capsella rubella HOM05D005371 ORTHO05D006863 1.7e-06 55.1 40 62.5
Gohir.A09G200400 Gossypium hirsutum HOM05D005371 ORTHO05D006863 2.2e-06 54.7 45 60.0
Gohir.D09G194600 Gossypium hirsutum HOM05D005371 ORTHO05D006863 2.2e-06 54.7 45 60.0
Lj6P663T68 Lonicera japonica HOM05D005371 ORTHO05D006863 2.2e-06 54.7 45 57.8
Cfa015560 Carpinus fangiana HOM05D005371 ORTHO05D006863 2.9e-06 54.3 45 57.8
ECA232G2257 Erigeron canadensis HOM05D005371 ORTHO05D006863 3.8e-06 53.9 45 55.6
Gorai.006G218000 Gossypium raimondii HOM05D005371 ORTHO05D006863 3.8e-06 53.9 45 60.0
Thecc.04G219500 Theobroma cacao HOM05D005371 ORTHO05D006863 3.8e-06 53.9 45 62.2
C05p61040 Brassica napus HOM05D000171 ORTHO05D000101 5.0e-06 53.5 40 57.5
BolC5t34761H Brassica oleracea HOM05D000171 ORTHO05D000101 5.0e-06 53.5 40 57.5
Os03g0320900 Oryza sativa ssp. japonica HOM05D005371 ORTHO05D006863 5.0e-06 53.5 45 60.0
unitig_8.g3082 Utricularia gibba HOM05D001103 ORTHO05D000954 5.0e-06 53.5 45 48.9
ATR0307G094 Amborella trichopoda HOM05D005371 ORTHO05D006863 6.5e-06 53.1 41 61.0
Gorai.011G168200 Gossypium raimondii HOM05D005371 ORTHO05D006863 6.5e-06 53.1 45 60.0
QL06p005861 Quercus lobata HOM05D005371 ORTHO05D006863 6.5e-06 53.1 44 56.8
Duzib151G0238 Durio zibethinus HOM05D005371 ORTHO05D006863 8.5e-06 52.8 40 60.0
Psat1g184760 Pisum sativum HOM05D005371 ORTHO05D006863 8.5e-06 52.8 36 63.9


User provided reference genes

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