Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1097100 Malus domestica HOM05D002004 ORTHO05D002089 6.7e-30 133.3 63 100.0
MD14G1094100 Malus domestica HOM05D002004 ORTHO05D002089 1.5e-10 68.9 40 82.5
Prupe.7G120600 Prunus persica HOM05D002004 ORTHO05D002089 5.9e-10 67.0 40 80.0
MELO3C009423.2 Cucumis melo HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
CsaV3_3G036690 Cucumis sativus L. HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
Gohir.A11G322400 Gossypium hirsutum HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
Gorai.007G371500 Gossypium raimondii HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
PSO063G0947 Papaver somniferum HOM05D002004 ORTHO05D002089 8.5e-09 63.2 42 71.4
PSO339G6363 Papaver somniferum HOM05D002004 ORTHO05D002089 8.5e-09 63.2 42 71.4
Sed0021919 Sechium edule HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
Thecc.05G078700 Theobroma cacao HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
TAR369G0230 Trochodendron aralioides HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
TAR623G0210 Trochodendron aralioides HOM05D002004 ORTHO05D002089 8.5e-09 63.2 40 75.0
Oeu030476.1 Olea europaea HOM05D002004 ORTHO05D002089 1.1e-08 62.8 40 75.0
GSVIVG01033748001 Vitis vinifera HOM05D002004 ORTHO05D002089 1.1e-08 62.8 40 75.0
Dinv35857 Davidia involucrata HOM05D002004 ORTHO05D002089 1.4e-08 62.4 40 75.0
Lj3A1005T46 Lonicera japonica HOM05D002004 ORTHO05D002089 1.4e-08 62.4 40 75.0
Lj3A1006T36 Lonicera japonica HOM05D002004 ORTHO05D002089 1.4e-08 62.4 38 68.4
Nn2g13961 Nelumbo nucifera HOM05D002004 ORTHO05D002089 1.4e-08 62.4 40 75.0
Peaxi162Scf00795g00039 Petunia axillaris HOM05D002004 ORTHO05D002089 1.9e-08 62.0 40 72.5
FvH4_6g17490 Fragaria vesca HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
FAN02G4563 Fragaria x ananassa HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
FAN05G3948 Fragaria x ananassa HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
FAN05G5698 Fragaria x ananassa HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
FAN09G3582 Fragaria x ananassa HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
FAN14G0970 Fragaria x ananassa HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
QL07p040902 Quercus lobata HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
Rhsim03G0083300 Rhododendron simsii HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 75.0
RcHm_v2.0_Chr3g0471731 Rosa chinensis HOM05D002004 ORTHO05D002089 2.5e-08 61.6 40 72.5
Actinidia39870 Actinidia chinensis HOM05D002004 ORTHO05D002089 3.2e-08 61.2 40 75.0
Duzib093G1827 Durio zibethinus HOM05D002004 ORTHO05D002089 3.2e-08 61.2 40 72.5
Lalb_Chr06g0170121 Lupinus albus HOM05D002004 ORTHO05D002089 3.2e-08 61.2 40 75.0
Sc02g0001240 Simmondsia chinensis HOM05D002004 ORTHO05D002089 3.2e-08 61.2 40 72.5
vmacro07338 Vaccinium macrocarpon HOM05D002004 ORTHO05D002089 3.2e-08 61.2 40 75.0
Cpa.g.sc128.55 Carica papaya HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 72.5
Cpa.g.sc5.101 Carica papaya HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 75.0
CiPaw.09G007200 Carya illinoinensis HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 72.5
ClCG10G019500 Citrullus lanatus HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 72.5
Gohir.D11G341500 Gossypium hirsutum HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 72.5
Nitab4.5_0000680g0040 Nicotiana tabacum HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 72.5
Nitab4.5_0009834g0010 Nicotiana tabacum HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 72.5
Sed0017412 Sechium edule HOM05D002004 ORTHO05D002089 4.2e-08 60.8 40 75.0
Aqoxy2G01497 Aquilegia oxysepala HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 70.0
CSS0009311 Camellia sinensis var. sinensis HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 75.0
CAN.G824.45 Capsicum annuum HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 72.5
COL.COLO4_22290 Corchorus olitorius HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 70.0
Duzib128G1748 Durio zibethinus HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 70.0
Eucgr.A01571 Eucalyptus grandis HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 70.0
TAR636G2758 Trochodendron aralioides HOM05D002004 ORTHO05D002089 5.5e-08 60.5 40 72.5
DCAR_015027 Daucus carota HOM05D002004 ORTHO05D002089 7.2e-08 60.1 40 72.5
QL04p040616 Quercus lobata HOM05D002004 ORTHO05D002089 7.2e-08 60.1 40 75.0
GSVIVG01034687001 Vitis vinifera HOM05D002004 ORTHO05D002089 7.2e-08 60.1 40 72.5
CSS0008966 Camellia sinensis var. sinensis HOM05D002004 ORTHO05D002089 9.4e-08 59.7 40 70.0
CSS0043737 Camellia sinensis var. sinensis HOM05D002004 ORTHO05D002089 9.4e-08 59.7 40 70.0
Cc06_g05030 Coffea canephora HOM05D002004 ORTHO05D002089 9.4e-08 59.7 40 72.5
Glyma.20G189033 Glycine max HOM05D002004 ORTHO05D002089 9.4e-08 59.7 40 72.5
Lj2A26G26 Lonicera japonica HOM05D002004 ORTHO05D002089 9.4e-08 59.7 37 78.4
unitig_8.g4714 Utricularia gibba HOM05D002004 ORTHO05D002089 9.4e-08 59.7 40 72.5
Actinidia11321 Actinidia chinensis HOM05D002004 ORTHO05D002089 1.2e-07 59.3 40 72.5
MSTRG.10340 Avicennia marina HOM05D002004 ORTHO05D002089 1.2e-07 59.3 40 72.5
AUR62033603 Chenopodium quinoa HOM05D002004 ORTHO05D002089 1.2e-07 59.3 40 67.5
AUR62037899 Chenopodium quinoa HOM05D002004 ORTHO05D002089 1.2e-07 59.3 40 67.5
Nn6g35089 Nelumbo nucifera HOM05D002004 ORTHO05D002089 1.2e-07 59.3 40 70.0
Haze_19513 Corylus avellana HOM05D002004 ORTHO05D002089 1.6e-07 58.9 40 72.5
Dinv31279 Davidia involucrata HOM05D002004 ORTHO05D002089 1.6e-07 58.9 37 75.7
HanXRQChr01g0028421 Helianthus annuus HOM05D002004 ORTHO05D002089 1.6e-07 58.9 40 70.0
Phvul.007G105700 Phaseolus vulgaris HOM05D002004 ORTHO05D002089 1.6e-07 58.9 40 72.5
SGA_v2.0_scaffold40G15432 Striga asiatica HOM05D002004 ORTHO05D002089 1.6e-07 58.9 40 72.5
CSS0017874 Camellia sinensis var. sinensis HOM05D002004 ORTHO05D002089 2.1e-07 58.5 40 72.5
Cfa016511 Carpinus fangiana HOM05D002004 ORTHO05D002089 2.1e-07 58.5 40 72.5
Atru.chr12.951 Acer truncatum HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.3IIQ4T Arachis hypogaea HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.Q0U0LT Arachis hypogaea HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 70.0
Os04g0405800 Oryza sativa ssp. japonica HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 67.5
PGR004G2607 Punica granatum HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 67.5
TWI53G1136 Tripterygium wilfordii HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 67.5
TWI77G0431 Tripterygium wilfordii HOM05D002004 ORTHO05D002089 2.7e-07 58.2 40 67.5
Lsat_1_v5_gn_1_50681 Lactuca sativa HOM05D002004 ORTHO05D002089 3.6e-07 57.8 40 67.5
Lalb_Chr06g0172171 Lupinus albus HOM05D002004 ORTHO05D002089 3.6e-07 57.8 40 70.0
Manes.09G061000 Manihot esculenta HOM05D002004 ORTHO05D002089 3.6e-07 57.8 40 67.5
PGSC0003DMG400002727 Solanum tuberosum HOM05D002004 ORTHO05D002089 3.6e-07 57.8 39 71.8
HPP92_023106 Vanilla planifolia HOM05D002004 ORTHO05D002089 3.6e-07 57.8 40 70.0
Actinidia06710 Actinidia chinensis HOM05D002004 ORTHO05D002089 4.6e-07 57.4 37 75.7
Migut.L01743 Erythranthe guttata HOM05D002004 ORTHO05D002089 4.6e-07 57.4 40 67.5
Lsat_1_v5_gn_6_26780 Lactuca sativa HOM05D002004 ORTHO05D002089 4.6e-07 57.4 40 67.5
Ca_11611_v3 Cicer arietinum L. HOM05D002004 ORTHO05D002089 6.1e-07 57.0 40 70.0
COL.COLO4_34169 Corchorus olitorius HOM05D002004 ORTHO05D002089 6.1e-07 57.0 40 65.0
HanXRQChr13g0400101 Helianthus annuus HOM05D002004 ORTHO05D002089 6.1e-07 57.0 40 67.5
Manes.07G092200 Manihot esculenta HOM05D002004 ORTHO05D002089 6.1e-07 57.0 40 65.0
Medtr1g061600 Medicago truncatula HOM05D002004 ORTHO05D002089 6.1e-07 57.0 40 70.0
vmacro07215 Vaccinium macrocarpon HOM05D002004 ORTHO05D002089 6.1e-07 57.0 37 73.0
Aa31LG3G2560 Aethionema arabicum HOM05D002004 ORTHO05D002089 7.9e-07 56.6 39 64.1
Aqoxy1G00973 Aquilegia oxysepala HOM05D002004 ORTHO05D002089 7.9e-07 56.6 39 69.2
AT3G10030 Arabidopsis thaliana HOM05D002004 ORTHO05D002089 7.9e-07 56.6 39 69.2
PSO339G5806 Papaver somniferum HOM05D002004 ORTHO05D002089 7.9e-07 56.6 40 67.5
PSO384G0406 Papaver somniferum HOM05D002004 ORTHO05D002089 7.9e-07 56.6 40 67.5
Psat6g074440 Pisum sativum HOM05D002004 ORTHO05D002089 7.9e-07 56.6 40 67.5
TPR.G5662 Trifolium pratense HOM05D002004 ORTHO05D002089 7.9e-07 56.6 40 67.5
Zm00001eb084300 Zea mays HOM05D002004 ORTHO05D002089 7.9e-07 56.6 40 67.5
AL3G21340 Arabidopsis lyrata HOM05D002004 ORTHO05D002089 1.0e-06 56.2 39 66.7
Carub.0003s0913 Capsella rubella HOM05D002004 ORTHO05D002089 1.0e-06 56.2 39 66.7
Ciclev10031224m.g Citrus clementina HOM05D002004 ORTHO05D002089 1.0e-06 56.2 40 67.5
MBI17_g20225_MAGBIO Magnolia biondii HOM05D002004 ORTHO05D002089 1.0e-06 56.2 40 67.5
Ciclev10032787m.g Citrus clementina HOM05D002004 ORTHO05D002089 1.4e-06 55.8 40 67.5
Sp3g08340 Schrenkiella parvula HOM05D002004 ORTHO05D002089 1.4e-06 55.8 39 66.7
Lj5g0014282 Lotus japonicus HOM05D002004 ORTHO05D002089 1.8e-06 55.5 40 67.5
ECA248G3876 Erigeron canadensis HOM05D002004 ORTHO05D002089 2.3e-06 55.1 40 60.0
Thhalv10020471m.g Eutrema salsugineum HOM05D002004 ORTHO05D002089 2.3e-06 55.1 39 64.1
Solyc09g008850.3 Solanum lycopersicum HOM05D002004 ORTHO05D002089 2.3e-06 55.1 39 66.7
Sopen09g003640 Solanum pennellii HOM05D002004 ORTHO05D002089 2.3e-06 55.1 39 66.7
Atru.chr8.1667 Acer truncatum HOM05D002004 ORTHO05D002089 3.9e-06 54.3 40 65.0
PSO675G1342 Papaver somniferum HOM05D002004 ORTHO05D002089 5.1e-06 53.9 40 62.5
Phvul.007G224400 Phaseolus vulgaris HOM05D002004 ORTHO05D002089 5.1e-06 53.9 40 67.5
Potri.008G027000 Populus trichocarpa HOM05D002004 ORTHO05D002089 5.1e-06 53.9 40 60.0
Prupe.2G090800 Prunus persica HOM05D002004 ORTHO05D002089 5.1e-06 53.9 37 73.0
A05p39020 Brassica napus HOM05D002004 ORTHO05D002089 6.7e-06 53.5 39 64.1
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 6.7e-06 53.5 39 64.1
BolC5t34461H Brassica oleracea HOM05D002004 ORTHO05D002089 6.7e-06 53.5 39 64.1
BraA05t22693Z Brassica rapa HOM05D002004 ORTHO05D002089 6.7e-06 53.5 39 64.1
Glyma.10G065100 Glycine max HOM05D002004 ORTHO05D002089 6.7e-06 53.5 40 67.5
CARHR084530 Cardamine hirsuta HOM05D002004 ORTHO05D002089 8.8e-06 53.1 39 66.7
ECA232G1157 Erigeron canadensis HOM05D002004 ORTHO05D002089 8.8e-06 53.1 37 64.9


User provided reference genes

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