Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 4.9e-82 307.8 157 100.0
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 4.3e-62 241.5 140 88.6
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.7e-37 159.8 111 74.8
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 4.2e-33 145.2 117 68.4
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 3.6e-32 142.1 88 78.4
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 1.5e-30 136.7 111 65.8
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 7.5e-30 134.4 111 64.9
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.1e-28 130.6 111 62.2
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.4e-28 129.4 128 57.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.6e-27 126.7 118 57.6
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.7e-27 125.9 106 62.3
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 2.7e-27 125.9 120 58.3
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.9e-27 124.8 111 61.3
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.3e-26 123.6 111 60.4
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.3e-26 123.6 131 55.0
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.9e-26 122.5 106 61.3
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 5.0e-26 121.7 108 63.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 6.5e-26 121.3 116 56.9
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.2e-25 117.9 111 58.6
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 9.4e-25 117.5 117 53.8
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.7e-24 115.9 115 53.0
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 2.7e-24 115.9 105 60.0
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 3.6e-24 115.5 140 50.7
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 6.1e-24 114.8 124 54.0
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 2.3e-23 112.8 109 57.8
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.0e-23 112.1 133 48.1
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 4.0e-23 112.1 117 56.4
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 5.2e-23 111.7 110 56.4
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.5e-22 110.2 139 51.1
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.5e-22 110.2 133 47.4
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.5e-22 110.2 110 52.7
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 2.0e-22 109.8 133 47.4
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.0e-22 109.8 114 51.8
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 2.6e-22 109.4 116 56.0
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 5.7e-22 108.2 135 47.4
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 7.5e-22 107.8 128 50.8
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 9.8e-22 107.5 118 53.4
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 9.8e-22 107.5 118 53.4
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.8e-21 105.9 110 55.5
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.8e-21 105.9 132 50.8
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.8e-21 105.9 130 46.9
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.7e-21 105.5 142 47.9
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 4.8e-21 105.1 114 50.9
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.8e-21 105.1 132 50.8
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 6.3e-21 104.8 113 50.4
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 8.3e-21 104.4 85 63.5
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 8.3e-21 104.4 77 67.5
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-20 104.0 130 50.8
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.1e-20 104.0 126 46.0
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.4e-20 103.6 88 60.2
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.8e-20 103.2 131 49.6
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.4e-20 102.8 128 49.2
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 3.1e-20 102.4 125 51.2
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 4.1e-20 102.1 125 48.8
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.1e-20 102.1 91 59.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 9.1e-20 100.9 119 49.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.2e-19 100.5 125 50.4
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 1.6e-19 100.1 132 49.2
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.6e-19 100.1 109 56.9
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 2.7e-19 99.4 128 47.7
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.7e-19 99.4 86 60.5
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 4.5e-19 98.6 136 43.4
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.5e-19 98.6 124 50.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 7.7e-19 97.8 138 42.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.0e-18 97.4 141 46.1
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 1.0e-18 97.4 138 45.7
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.3e-18 97.1 103 51.5
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.3e-18 97.1 86 62.8
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.7e-18 96.7 102 52.9
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.9e-18 95.9 110 51.8
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.9e-18 95.9 114 53.5
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 5.0e-18 95.1 134 46.3
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 5.0e-18 95.1 134 46.3
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 6.5e-18 94.7 136 42.6
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 8.6e-18 94.4 112 50.9
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.5e-17 92.8 108 46.3
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 1.2e-16 90.5 106 49.1
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.6e-16 90.1 134 44.8
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.6e-16 90.1 134 42.5
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.6e-16 90.1 85 56.5
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 1.6e-16 90.1 108 49.1
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-16 89.7 136 42.6
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.8e-16 89.4 108 48.1
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.8e-16 89.4 120 45.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 3.6e-16 89.0 136 41.2
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 6.1e-16 88.2 135 43.0
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 8.0e-16 87.8 122 42.6
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.0e-15 87.4 110 49.1
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 3.0e-15 85.9 93 48.4
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 4.0e-15 85.5 93 48.4
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 4.0e-15 85.5 93 48.4
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 5.2e-15 85.1 118 45.8
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.8e-15 84.7 81 56.8
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.8e-15 84.7 84 58.3
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 8.9e-15 84.3 110 45.5
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.2e-14 84.0 99 55.6
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.0e-14 83.2 102 48.0
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.6e-14 82.8 117 43.6
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 2.6e-14 82.8 88 52.3
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 2.6e-14 82.8 88 54.5
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.6e-14 82.8 107 45.8
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.6e-14 82.8 111 48.6
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 5.7e-14 81.6 87 52.9
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 5.7e-14 81.6 87 54.0
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 5.7e-14 81.6 119 46.2
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 7.5e-14 81.3 115 43.5
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 7.5e-14 81.3 115 43.5
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 7.5e-14 81.3 115 43.5
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.7e-13 80.1 99 49.5
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.2e-13 79.7 72 56.9
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 8.3e-13 77.8 120 42.5
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 8.3e-13 77.8 108 43.5
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.4e-12 76.3 120 41.7
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.1e-12 75.9 65 58.5
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 5.4e-12 75.1 92 51.1
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 9.2e-12 74.3 70 55.7
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 1.6e-11 73.6 67 55.2
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 2.0e-11 73.2 136 36.8
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 7.8e-11 71.2 110 46.4
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 7.8e-11 71.2 107 42.1
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.3e-10 69.7 45 75.6
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 2.3e-10 69.7 94 44.7
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.3e-10 69.7 107 41.1
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.9e-10 69.3 65 61.5
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 3.8e-10 68.9 131 35.9
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 6.6e-10 68.2 76 48.7
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.5e-09 66.2 76 52.6
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 7.3e-09 64.7 54 63.0
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 7.3e-09 64.7 54 63.0
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.6e-08 63.5 74 51.4


User provided reference genes

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